[MUMmer-help] nucmer error

[nelcaster7 <nel...@gm...>]

Hi all,



I am new to mummer/nucmer and to test whether it works for my data, I have
input 3 wheat fasta sequences (query) and align it against rice sequence
data (all.seq) from MSU7 as a reference seq. I am using this command:



nucmer -maxmatch -c 100 -p nucmer all.con Wheat_Genes_3fasta_anna.fasta



Unfortunately, I am getting these results at the end of the process:



4: FINISHING DATA

sh: nucmer.mgaps: No such file or directory

ERROR: postnuc returned non-zero



And it returned no results.



Any help you could offer is highly appreciated.



Thanks

Enzo