Re: [MUMmer-help] Question about using .gff3 files in mapview.

[Adam P. <aph...@gm...>]

Hi Kurt,
My apologies, but MapView has not be maintained for many years and is a
very unstable script. The original developer is no longer affiliated with
the project. This issue keeps arising on the mailing list, so I will plan
on removing it from the next release.

Best,
-Adam



On Tue, Aug 19, 2014 at 1:53 PM, Wollenberg, Kurt (NIH/NIAID) [C] <
wol...@ni...> wrote:

> Hello:
>
> I am trying to run a map view analysis based on the tutorial and am
> getting a frustrating error when I try to include the .gff3 file for my
> reference sequence. I'm getting the error "The reference seq ID can't be
> found in the GFF files !". I have gone into my .gff3 file (downloaded the
> GenBank(full) file in gff3 format from GenBank) and my promer.coords file
> and made sure that the first ID under [TAGS] in .coords is identical to the
> entry in the first column of my .gff3 file. I'm still getting this error no
> matter how I try to make these match. Has anyone else out there run into
> this and is there a known solution? Am I trying to match the wrong fields?
>
> Cheers,
> Kurt Wollenberg, Ph.D.
> Contractor - MSC, Inc.
> Phylogenetics Specialist
> Computational Biology Section
> Bioinformatics and Computational Biosciences Branch (BCBB)
> OCICB/OSMO/OD/NIAID/NIH
>
> 31 Center Drive, Room 3B62
> Bethesda, MD 20892-0485
> Office 301-402-8628
> http://bioinformatics.niaid.nih.gov<http://bioinformatics.niaid.nih.gov/>
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