[MUMmer-help] Question about using .gff3 files in mapview.

[Wollenberg, K. (NIH/N. [C] <wol...@ni...>]

Hello:

I am trying to run a map view analysis based on the tutorial and am getting a frustrating error when I try to include the .gff3 file for my reference sequence. I'm getting the error "The reference seq ID can't be found in the GFF files !". I have gone into my .gff3 file (downloaded the GenBank(full) file in gff3 format from GenBank) and my promer.coords file and made sure that the first ID under [TAGS] in .coords is identical to the entry in the first column of my .gff3 file. I'm still getting this error no matter how I try to make these match. Has anyone else out there run into this and is there a known solution? Am I trying to match the wrong fields?

Cheers,
Kurt Wollenberg, Ph.D.
Contractor - MSC, Inc.
Phylogenetics Specialist
Computational Biology Section
Bioinformatics and Computational Biosciences Branch (BCBB)
OCICB/OSMO/OD/NIAID/NIH

31 Center Drive, Room 3B62
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