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From: Adam P. <aph...@gm...> - 2014-07-26 01:45:15
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Hi Theo, I have not seen that error before. The "geometry" option is an X toolkit parameter that sets the size of the displayed window. Can you email some details of the OS/environment you are running? Meanwhile, you might be able to get it working by commenting out a line in the mummerplot script. Search the script for the line containing "geometry" (there's only one, I believe), comment it out with a '#', and rerun. Best, -Adam On Fri, Jul 25, 2014 at 1:43 AM, <The...@cs...> wrote: > Hi, > > > > Any idea what’s cusing this error when trying to draw a nucmer plot?? > > > > Thanks. > > > > Theo > > > > > > Line= > > > > $mummerplot out.delta > > > > Setting up libexiv2-12 (0.23-1) ... > > Setting up libnetpbm10 (2:10.0-15+b1) ... > > Setting up librsvg2-common:amd64 (2.36.1-1) ... > > Setting up netpbm (2:10.0-15+b1) ... > > Setting up psutils (1.17.dfsg-1) ... > > Setting up liblensfun-data (0.2.5-2) ... > > Setting up liblensfun0 (0.2.5-2) ... > > Setting up ufraw-batch (0.18-2) ... > > Processing triggers for libgdk-pixbuf2.0-0:amd64 ... > > all29c@aahl-02-mel:~/data/015-campy_ass/miseq/2898$ mummerplot out.delta > > defined(%hash) is deprecated at /usr/bin/mummerplot line 884. > > (Maybe you should just omit the defined()?) > > defined(%hash) is deprecated at /usr/bin/mummerplot line 894. > > (Maybe you should just omit the defined()?) > > defined(%hash) is deprecated at /usr/bin/mummerplot line 981. > > (Maybe you should just omit the defined()?) > > defined(%hash) is deprecated at /usr/bin/mummerplot line 991. > > (Maybe you should just omit the defined()?) > > defined(%hash) is deprecated at /usr/bin/mummerplot line 1034. > > (Maybe you should just omit the defined()?) > > defined(%hash) is deprecated at /usr/bin/mummerplot line 1044. > > (Maybe you should just omit the defined()?) > > gnuplot 4.6 patchlevel 0 > > Reading delta file out.delta > > Writing plot files out.fplot, out.rplot > > Writing gnuplot script out.gp > > Forking mouse listener > > Rendering plot to screen > > Cannot open load file '-geometry' > > "-geometry", line 0: util.c: No such file or directory > > > > WARNING: Unable to run 'gnuplot -geometry 500x500+0+0 -title mummerplot > out.gp', Inappropriate ioctl for device > > > > *Dr Theo R. Allnutt* > > Project Scientist: Bioinformatics *|* Food Microbiology and Safety Group > Animal, Food and Health Sciences > CSIRO > > > > Phone: +61 397 313 204* | *Fax: +61 3 9731 3201 > the...@cs... <Nar...@cs...> *|* www.csiro.au > Address: CAFHS, 671 Sneydes Road, Werribee, VIC 3030; *and *AAHL, PO Bag > 24 > Geelong VIC 3220. > > > > > > > > > > *Dr Theo R. Allnutt* > > Project Scientist: Bioinformatics *|* Food Microbiology and Safety Group > Animal, Food and Health Sciences > CSIRO > > > > Phone: +61 397 313 204* | *Fax: +61 3 9731 3201 > the...@cs... <Nar...@cs...> *|* www.csiro.au > Address: CAFHS, 671 Sneydes Road, Werribee, VIC 3030; *and *AAHL, PO Bag > 24 > Geelong VIC 3220. > > > > > > > ------------------------------------------------------------------------------ > Want fast and easy access to all the code in your enterprise? Index and > search up to 200,000 lines of code with a free copy of Black Duck > Code Sight - the same software that powers the world's largest code > search on Ohloh, the Black Duck Open Hub! Try it now. > http://p.sf.net/sfu/bds > _______________________________________________ > MUMmer-help mailing list > MUM...@li... > https://lists.sourceforge.net/lists/listinfo/mummer-help > > |