Re: [MUMmer-help] mummerplot problem: bad perl interpreter

[Adam P. <aph...@gm...>]

Hi Oliver,
Is this a MUMmer install that you performed, or did it come bundled with
PAGIT? It should be compatible with a number of perl versions. I suspect
the top line of the script that points it to the perl interpreter was
somehow changed. If nucmer is working, just replace the first line of
mummerplot with whatever the first line of nucmer says, e.g.

#!/usr/bin/perl

Best,
-Adam




On Mon, Aug 5, 2013 at 4:24 AM, Oliver Balmer <oli...@un...>wrote:

> Hi
>
> I am trying to run mummerplot on a nucmer .delta file but keep getting
> the error message "....../PAGIT.V1.64bit/PAGIT/bin/mummerplot:
> /software/perl-5.8.8/bin/perl: bad interpreter: No such file or
> directory". Is mummerplot looking for a specific version of perl in a
> specific place that I have missed pointing to? Any other perl scripts
> (and nucmer) run without problems. Any suggestions how I can find out
> what the exact problem is and how to solve it? I did adjust and source
> the file PAGIT/sourceme.pagit, which I suspected would hold all
> instructions where to look for specific pieces of software.
>
> Thanks, Oliver
>
>
>
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