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From: guanhui b. <gua...@gm...> - 2010-09-17 03:03:38
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hello, when i used Mummer to align a sequence to a contigs, using the following commond "/var/data/MUMmer3.21/nucmer --prefix=$1 $3 $2 /var/data/MUMmer3.21/delta-filter -r -q $1.delta > $1.filter /var/data/MUMmer3.21/show-coords -rcl $1.delta > $1.coords" the coords file is empty. but it has two hits by blast . is a bug of Mummer? thanks. -- Yours, Guanhui Bao Institute of Microbiology, Chinese Academy of Sciences NO.1 West Beichen Road Chaoyang District Beijing 100101 P. R. China |