Re: [MUMmer-help] MUMmer: Promer Nucmer errors

[Adam P. <aph...@gm...>]

Hi Apurv,
Did you move the mummer directory after building the source? The package has
a very basic Makefile, and moving the programs (especially the location of
aux_bin) after building the source can cause the pipelines, such as nucmer
and promer, to fail.

Best,
-Adam



On Sun, Oct 18, 2009 at 6:28 PM, Apurv Puri <apu...@gm...> wrote:

> Hi,
> I've been having some problems using the promer and nucmer options of the
> mummer program. The following error keeps popping up when I use Promer and
> Nucmer.
>
> Promer
> ERROR: prepro -r returned non-zero
>
> Nucmer
> ERROR: prenuc -r returned non-zero
>
> The scripts in aux_bin seem to not work. I am not sure if it is the query
> or reference files that keep producing these errors. I am absolutely sure I
> am using fasta format files. Any help is appreciated.
> ------------------------------------------------------------
> Apurv Puri
> University of Illinois at Urbana-Champaign
> Chemical & Biomolecular Engineering
> apu...@gm...
> 814 490 7971
>
>
>
>
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