[MUMmer-help] MUMmer: Promer Nucmer errors

[Apurv P. <apu...@gm...>]

Hi,
I've been having some problems using the promer and nucmer options of the
mummer program. The following error keeps popping up when I use Promer and
Nucmer.

Promer
ERROR: prepro -r returned non-zero

Nucmer
ERROR: prenuc -r returned non-zero

The scripts in aux_bin seem to not work. I am not sure if it is the query or
reference files that keep producing these errors. I am absolutely sure I am
using fasta format files. Any help is appreciated.
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Apurv Puri
University of Illinois at Urbana-Champaign
Chemical & Biomolecular Engineering
apu...@gm...
814 490 7971