Hi Tal,
Unfortunately there is no program in the Mummer package that does what you need. Please try the Vmatch software (http://www.vmatch.de/). It is capable of such searches.

On Mon, May 31, 2010 at 5:34 PM, Tal Dagan <Tal.Dagan@uni-duesseldorf.de> wrote:

Dear Mummers,

It is possible to use Mummer in order to find non-exact matches?
For example, currently Im using it to find all exact matches of >=20bp long.
Can I use it to find all 99% similar matches of >=20bp long?

Thank you,



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