MUMmer Discussion

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Topic	Posts	Views	Last Post
Delta-filter takes a week but no output and no error message By henan.jiang on Fri Jul 14, 2023 09:08 AM	2	203	By 李中秋 on Mon Jul 21, 2025 02:14 AM
How to identify repeat regions in the reference sequence and masked u... By Manoj Kumar on Tue Feb 01, 2022 05:13 PM	1	186	By Manoj Kumar on Tue Feb 01, 2022 05:13 PM
MUMmer output to define core and accessory genomes By ambika Pokhrel on Wed May 19, 2021 09:29 PM	1	210	By ambika Pokhrel on Wed May 19, 2021 09:29 PM
mummerplot error By Juliana M K C Perseguini on Thu Apr 08, 2021 10:49 AM	1	507	By Juliana M K C Perseguini on Thu Apr 08, 2021 10:49 AM
Segmentation fault (core dumped) when run-mummer1 in [mummer@3.23] By Tom2021 on Mon Mar 29, 2021 10:39 AM	1	454	By Tom2021 on Mon Mar 29, 2021 10:39 AM
Nucmer appears to move data from one contig to another By Jonathan Gonzalez on Wed Dec 11, 2019 07:48 PM	2	373	By Jonathan Gonzalez on Thu Dec 12, 2019 04:13 PM
Error about stack smashing detected By Aaron on Mon Jan 21, 2019 10:07 AM	1	380	By Aaron on Mon Jan 21, 2019 10:07 AM
MUMmer Beginner By Emily Crantell on Wed Dec 26, 2018 08:59 PM	1	244	By Emily Crantell on Wed Dec 26, 2018 08:59 PM
Detect small InDels in highly similar Genome Assemblies By Moritz Blumer on Mon Sep 24, 2018 01:28 PM	1	235	By Moritz Blumer on Mon Sep 24, 2018 01:28 PM
Mummerplot problems By Jessika Nordin on Mon Dec 04, 2017 09:41 AM	1	1257	By Jessika Nordin on Mon Dec 04, 2017 09:41 AM
MUCmer By Juliana Eschholz on Fri Nov 10, 2017 08:11 PM	1	294	By Juliana Eschholz on Fri Nov 10, 2017 08:11 PM
mummerplot fails after modifying delta file headers By Stephen Williams on Thu Apr 27, 2017 09:20 PM	1	849	By Stephen Williams on Thu Apr 27, 2017 09:20 PM
Align multiple gene clusters: mummer skips random seqeunces By Stefano Romano on Sun Mar 12, 2017 08:25 PM	1	323	By Stefano Romano on Sun Mar 12, 2017 08:25 PM
ERROR: mummer and/or mgaps returned non-zero By Muhammad on Tue Mar 25, 2014 09:55 PM	4	4917	By ebioman on Fri Aug 12, 2016 08:24 AM
Error; Unable to run 'gnuplot500+0+0 -title mummerplot out.gp', No su... By Anthony Bayega on Thu Jun 16, 2016 11:33 PM	1	638	By Anthony Bayega on Thu Jun 16, 2016 11:33 PM
MUMMER By Nithya .K V on Wed Sep 16, 2015 04:56 AM	1	442	By Nithya .K V on Wed Sep 16, 2015 04:56 AM
mummerplot:ordering reference sequences on the X-axis By Mahul Chakraborty on Tue Jul 14, 2015 09:14 PM	1	701	By Mahul Chakraborty on Tue Jul 14, 2015 09:14 PM
E-value or other stat output By Enzo on Fri Nov 28, 2014 10:52 AM	1	433	By Enzo on Fri Nov 28, 2014 10:52 AM
Installation on Mac, check completed, but make install does not happen. By Zheng Zhou on Sat Nov 02, 2013 08:09 PM	2	979	By stredger on Fri Aug 22, 2014 12:49 AM
What output files are useful By Muhammad on Tue Mar 25, 2014 10:11 PM	1	579	By Muhammad on Tue Mar 25, 2014 10:11 PM
self-alignment off-diagonal hits By Nobody/Anonymous on Sat Sep 03, 2011 07:07 PM	7	1087	By Nobody/Anonymous on Mon Dec 03, 2012 12:53 PM
Mummer and Mummerplot help By Nobody/Anonymous on Fri Nov 14, 2008 04:10 PM	6	9355	By Nobody/Anonymous on Thu Sep 27, 2012 03:04 PM
TIGR::Foundation By Nobody/Anonymous on Thu May 03, 2007 09:46 PM	4	619	By Nobody/Anonymous on Thu Jul 12, 2012 02:58 PM
Intraspecies use of promer By Jolien van Hooff on Tue May 08, 2012 11:48 AM	1	171	By Jolien van Hooff on Tue May 08, 2012 11:48 AM
Problems installing MUMmer on my mac. By Anonymous on Thu Sep 08, 2011 09:37 PM	2	915	By Nobody/Anonymous on Mon Sep 12, 2011 03:28 PM

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