Multiview Lightsheet Data Reconstruction Code
Software for the reconstruction of multiview microscopic acquisitions
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Tree [af3d8a] master / History
| File | Date | Author | Commit |
|---|---|---|---|
| src | 2014-09-05 |
Stephan Preibisch
|
[af3d8a] Removed the message as it blocks the macro reco... |
| .gitignore | 2014-02-04 |
Stephan Preibisch
|
[192720] updated gitignore file |
| LICENSE | 2014-03-19 |
Stephan Preibisch
|
[7b0213] added LICENSE |
| README.md | 2014-09-02 |
Stephan Preibisch
|
[bdb789] updated readme |
| pom.xml | 2014-08-19 |
Stephan Preibisch
|
[9e6385] Updated the spimdata version |
Read Me
Introduction & Overview
Selective Plane Illumination Microscopy (SPIM, Science, 305(5686):1007-9) allows in toto imaging of large specimens by acquiring image stacks from multiple angles. However, to realize the full potential of these acquisitions the data needs to be reconstructed. This project implements several algorithms for the registration and fusion of multi-angle SPIM acquisitions.
See also the SPIM Registration page on the Fiji Wiki.
Citation
Please note that the SPIM reconstruction plugin available through Fiji, is based on publications. If you use it successfully for your research please be so kind to cite our work:
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S. Preibisch, S. Saalfeld, J. Schindelin and P. Tomancak (2010) "Software for bead-based registration of selective plane illumination microscopy data", Nature Methods, 7(6):418-419. Webpage
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S. Preibisch, F. Amat, E. Stamataki, M. Sarov, R.H. Singer, E. Myers and P. Tomancak (2014) “Efficient Bayesian-based Multiview Deconvolution”, Nature Methods, 11(6):645-648. Webpage