Multiview Lightsheet Data Reconstruction Activity
Software for the reconstruction of multiview microscopic acquisitions
Brought to you by:
preibischs
Activity for Multiview Lightsheet Data Reconstruction
-
George Funkenbusch posted a comment on discussion General Discussion
The example dataset on the ImageJ Wiki site leads to a 404 error. Would it be possible to have it reuploaded or get an alternative example dataset sent? Thank you!
-
Stephan Preibisch posted a comment on discussion General Discussion
This issue was just a minor hickup during migration to the ImgLib2 release version....
-
Hi, this issue is fixed since the last release of the software: https://github.c...
-
Thanks a lot Nico!
-
Nico Stuurman posted a comment on discussion General Discussion
Just figured out how to use the example dataset. Since this was non-intuitive and...
-
In the current version of Fiji, the command "Detect Interest Points for Registration”...
-
nelas posted a comment on discussion General Discussion
Hey Stephan, I tried to load a PSF image for the deconvolution of a nuclei based...
-
Do not compute DoG in parallel, explicitly call...
-
Removed the message as it blocks the macro reco...
-
Extend StackList so that it is possible to macr...
-
Fixed bug that remembered values can be higher ...
-
Try to fix another ImageJ macro recording failu...
-
Fixed default selection
-
updated readme
-
Does not crash when visualizing SPIM optimizati...
-
Add the plugin "SPIM Registration"
-
Make SPIM Registration work with new imglib, ne...
-
Johannes Schindelin committed [753aa1]
SPIM Registration: fix typo
-
Stephan Saalfeld committed [2656ad]
mpicbg: Model to interface
-
Work around missing setReadable() and friends i...
-
Merge branch 'spim-new' into mpicbg-model-inter...
-
Do not explicitely set the files readable, writ...
-
Benjamin Schmid committed [eedc96]
Included the video_editing repo into fiji (vide...
-
Added license
-
Removed stupid comment
-
Stephan Preibisch committed [46cd71]
Updated the SPIM Registration to Multi Channel
-
SPIM registration update
-
Stephan Preibisch committed [26a789]
Fixed typo
-
last missing parts...
-
let's see if this is the last part
-
Will not fail anymore if there is not enough RAM
-
Updated to new mpicbg
-
Work around missing setReadable() and friends i...
-
Removed mirroring of views which still needs an...
-
One more line change for output text
-
Fixed some more memory issues
-
Added interactive DoG
-
Replaced some System.out.println by IOFunctions...
-
Fix a few line ending issues
-
Update to SPIM registration
-
Get rid of ParsePattern
-
Small generics changes so that it compiles with
-
Single Channel BeadRegistration plugin function...
-
Fixed another bug ...
-
Refactoring...
-
Fixed bug that Multichannelregistration crashed
-
And another fix ...
-
Interactive DoG supports more options
-
Fixed another huge bug in multithreaded opening...
-
Added the new classes for JFreeChart
-
Multi-view fusion seems to work!
-
Working on visualization of timelapse
-
Reorganized plugin classes
-
Worked on plugins for SPIM and Stitching
-
SPIm Registration plugin should be ready for te...
-
Added version number
-
Fixed another bug, DoG was only 3d, did not wor...
-
Small bugfixes in SPIM registration
-
Works, except above the graph
-
updated spim configuration, more models are all...
-
Removed some generics so that java compiles
-
SPIM registration is now ready for real multich...
-
Cleaned up BeadSegmentation
-
Changed plugins.config
-
SPIM registration plugins starts working
-
Fixed bug in RANSAC, too many correspondences w...
-
Tobias Pietzsch committed [3f8942]
add DialogListener to populate plugin fields wh...
-
Preibisch committed [ae6158]
Moved old plugins to deprecated folder
-
Merge branch 'master' of ssh://fiji.sc/srv/git/...
-
Tobias Pietzsch committed [1c629d]
loading of huisken images works (for single-cha...
-
Interactive DoG supports now Hyperstacks if one...
-
Moved old plugins to deprecated folder
-
Tobias Pietzsch committed [bef2b5]
fix import paths and add SPIM_Opener dependency...
-
closing images when done
-
Added functions to apply transformations to exi...
-
Started with Multi-view deconvolution
-
Concatenate axial scaling also works with Rigid...
-
Tobias Pietzsch committed [bb622d]
Merge remote-tracking branch 'origin/spim-opene...
-
Can choose between additive and multiplicative ...
-
intermediate output just when debug is set to true
-
Made the hyperlink in generic dialog headless-save
-
Deconvolution seems work, regularization is mis...
-
updated documentation
-
Added Tikhonov regularization
-
Removed unnecessary IJ.logs, blending parameter...
-
multi-view deconvolution will write or show oup...
-
First step for deconvolution works ....
-
More options with CPU/memory usage
-
fixed bug if the input imaageplus is 2d, can re...
-
Shows a max projection of all averaged PSFs as ...
-
Extracts PSFs now ...
-
Fixed small bugs in the descriptor-based regist...
-
Interactive DoG can now deal with different tim...
-
Forgot to save before commiting, another headle...
-
Tobias Pietzsch committed [5c86ab]
SPIM_Registration: fixed a bug in the computati...
-
Tobias Pietzsch committed [750bb9]
Merge remote-tracking branch 'origin/spim-regis...
-
Tobias Pietzsch committed [4549c6]
set illuminations[] by calling parseIlluminatio...
-
Tobias Pietzsch committed [823c5e]
added non-recursive Subset generator
-
Tobias Pietzsch committed [bd6341]
do not normalize images before fusion.
-
If input stack is too big, CellContainerFactory...
1 >