Installed the program as written on the site mugsy.sourceforge.net but it returns the following error.. it seems it is not able to open 2 config files.
Gio 23 Set 2010 15:04:20 CEST
1: PREPARING DATA
sh: /Users/fw_haakon/mugsy/MUMmer3.20/aux_bin/prenuc: cannot execute binary file
ERROR: prenuc returned non-zero, please file a bug report
Gio 23 Set 2010 15:04:21 CEST
CMD:cat /tmp//k12_mg1655 | perl -ne 'if(/^\>([^\s\:]+)\:([^\s\:]+)/){if($1 ne $2){ print ">$1.$2 $1\n";} elsif(defined $1 && defined $2){print ">$1.$2\n";}else {print ">$1\n";}}else{die if(/\>/);print $_}' >> /tmp/k12align.all.fsa
CMD:cat /tmp//k12_w3110 | perl -ne 'if(/^\>([^\s\:]+)\:([^\s\:]+)/){if($1 ne $2){ print ">$1.$2 $1\n";} elsif(defined $1 && defined $2){print ">$1.$2\n";}else {print ">$1\n";}}else{die if(/\>/);print $_}' >> /tmp/k12align.all.fsa
Hi Vanja,
Just seeing this bug at sourceforge today.
Try the newest download and make sure you are running on a 64-bit Linux machine.
-Sam