/gcc/resources/b37/indices/gmapdb-2014-12-21/MT.fa
/gcc/resources/b37/indices/gmapdb-2014-12-21/human_g1k_v37.fa
Traceback (most recent call last):
File "/gcc/tools/MToolBox_v0.2.2/assembleMTgenome.py", line 124, in <module>
sample_name = os.getcwd().split('/')[-1].split('_')[1]
IndexError: list index out of range
Hi,
I receive the same error
File "/gcc/tools/MToolBox_v0.2.2/assembleMTgenome.py", line 124, in <module>
sample_name = os.getcwd().split('/')[-1].split('_')[1]
IndexError: list index out of range
Have you solved the issue?
Help would be much appreciated.
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
So I have been trying to get MToolbox to work. And I have come across this error.
python /gcc/tools/MToolBox_v0.2.2/assembleMTgenome.py -r /gcc/resources/b37/indices/gmapdb-2014-12-21/ -f MT.fa -i sample.bam -a human_g1k_v37.fa -o assemblyOutput -s /gcc/tools/samtools-0.1.18/samtools
/gcc/resources/b37/indices/gmapdb-2014-12-21/MT.fa
/gcc/resources/b37/indices/gmapdb-2014-12-21/human_g1k_v37.fa
Traceback (most recent call last):
File "/gcc/tools/MToolBox_v0.2.2/assembleMTgenome.py", line 124, in <module>
sample_name = os.getcwd().split('/')[-1].split('_')[1]
IndexError: list index out of range
And before you ask, yes I have read this thread:
https://sourceforge.net/p/mtoolbox/discussion/general/thread/2a83d216/
Thanks ahead of time, for any help.
Hi,
I receive the same error
File "/gcc/tools/MToolBox_v0.2.2/assembleMTgenome.py", line 124, in <module>
sample_name = os.getcwd().split('/')[-1].split('_')[1]
IndexError: list index out of range
Have you solved the issue?
Help would be much appreciated.
Dear all,
sorry for the delay in replying. anyway I have replied and cc'ed in our official support forum, ie https://groups.google.com/forum/#!forum/mtoolbox-users. Please let me know if you need any other help.
Best,
Domenico