/gcc/resources/b37/indices/gmapdb-2014-12-21/MT.fa
/gcc/resources/b37/indices/gmapdb-2014-12-21/human_g1k_v37.fa
Traceback (most recent call last):
File "/gcc/tools/MToolBox_v0.2.2/assembleMTgenome.py", line 124, in <module>
sample_name = os.getcwd().split('/')[-1].split('_')[1]
IndexError: list index out of range</module>
Hi,
I receive the same error
File "/gcc/tools/MToolBox_v0.2.2/assembleMTgenome.py", line 124, in <module>
sample_name = os.getcwd().split('/')[-1].split('_')[1]
IndexError: list index out of range</module>
Have you solved the issue?
Help would be much appreciated.
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
So I have been trying to get MToolbox to work. And I have come across this error.
python /gcc/tools/MToolBox_v0.2.2/assembleMTgenome.py -r /gcc/resources/b37/indices/gmapdb-2014-12-21/ -f MT.fa -i sample.bam -a human_g1k_v37.fa -o assemblyOutput -s /gcc/tools/samtools-0.1.18/samtools
/gcc/resources/b37/indices/gmapdb-2014-12-21/MT.fa
/gcc/resources/b37/indices/gmapdb-2014-12-21/human_g1k_v37.fa
Traceback (most recent call last):
File "/gcc/tools/MToolBox_v0.2.2/assembleMTgenome.py", line 124, in <module>
sample_name = os.getcwd().split('/')[-1].split('_')[1]
IndexError: list index out of range</module>
And before you ask, yes I have read this thread:
https://sourceforge.net/p/mtoolbox/discussion/general/thread/2a83d216/
Thanks ahead of time, for any help.
Hi,
I receive the same error
File "/gcc/tools/MToolBox_v0.2.2/assembleMTgenome.py", line 124, in <module>
sample_name = os.getcwd().split('/')[-1].split('_')[1]
IndexError: list index out of range</module>
Have you solved the issue?
Help would be much appreciated.
Dear all,
sorry for the delay in replying. anyway I have replied and cc'ed in our official support forum, ie https://groups.google.com/forum/#!forum/mtoolbox-users. Please let me know if you need any other help.
Best,
Domenico