MSP-HTPrimer is an open source, web-based high-throughput and genome-wide primer design pipeline for bisulfite-based assays (MSP, BSP and COBRA) and MSRE-PCR assay and capable of simultaneously processing hundreds to thousands of target sequences. MSP-HTPrimer takes genome-wide annotations of SNPs and repeats into consideration to design primer pairs for higher success rate. MSP-HTPrimer enables hierarchical filtering and visualisation of designed primers in UCSC genome browser for efficient selection of assays.

Features

  • BSP
  • MSP
  • DNA methylation
  • BSP-COBRA
  • MSRE

Project Samples

MSP-HTPrimer BS conversion MSP-HTPrimer benchmark MSP-HTPrimer workflow MSP-HTPrimer query page MSP-HTPrimer result page for MSP MSP-HTPrimer result page for PyroSeq primers

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Registered

2015-10-26
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