Re: [moose-generic] MOOSE_installation_problem

[Vadim A. <ast...@nc...>]

Thank you. I will set those flags and will try again.
Vadim.

Niraj Dudani <ni...@nc...> wrote:

>Hi Vadim,
>
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>The errors you reported seem to be due to path issues. Can you check where the GSL and
>HDF5 libraries have been installed? You may have to edit the Makefile to get it to work.
>The library path has to be appended to the LIBS variable, and the include path to the
>CXXFLAGS variable. In the current revision (r4433), the GSL section of the Makefile is
>on line numbers 208-209, and the HDF5 section is at line numbers 262-263.
>
>Best,
>Niraj
>
>>
>> Hi
>> I have python-2.7 with GSL and HDF5 libraries installed    but I am getting  a lot of
>> errors every time I try to do "make BUILD=release" on CentOS 5.5  x86_64 x86_64 x86_64
>> GNU/Linux
>> We are trying to have it installed on the cluster and using "module" commands to load
>> all libraries.
>>
>> Can somebody advice what might be missing ?  Thanks a lot in advance.
>> Vadim.
>>
>> Here the error:
>>
>>
>> MarkovChannel.cpp:16:27: error: gsl/gsl_errno.h: No such file or directory***
>> [MarkovChannel.o] Error 1
>>
>> HDF5WriterBase.cpp:33:18: error: hdf5.h: No such file or directorymake[1]: ***
>> [HDF5WriterBase.o] Error 1
>>
>> Stoich.cpp:42:27: error: gsl/gsl_errno.h: No such file or directorymake[1]: ***
>> [Stoich.o] Error 1
>>
>> rtMultiCompartment.cpp:11:27: error: gsl/gsl_errno.h: No such file or
>> directoryrtMultiCompartment.cpp:12:28: error: gsl/gsl_matrix.h: No such file or
>> directoryrtMultiCompartment.cpp:13:27: error: gsl/gsl_odeiv.h: No such file or directory
>> ../ksolve/OdeSystem.h:51: warning: ISO C++ forbids declaration of 'gsl_odeiv_step_type'
>> with no type../ksolve/OdeSystem.h:51: error: expected ';' before '*'
>> token../ksolve/OdeSystem.h:52: warning: ISO C++ forbids declaration of 'gsl_odeiv_step'
>> with no type../ksolve/OdeSystem.h:52: error: expected ';' before '*'
>> token../ksolve/OdeSystem.h:53: warning: ISO C++ forbids declaration of
>> 'gsl_odeiv_control' with no type../ksolve/OdeSystem.h:53: error: expected ';' before '*'
>> token../ksolve/OdeSystem.h:54: warning: ISO C++ forbids declaration of
>> 'gsl_odeiv_evolve' with no type../ksolve/OdeSystem.h:54: error: expected ';' before '*'
>> token../ksolve/OdeSystem.h:55: error: 'gsl_odeiv_system' does not name a type
>> [rtMultiCompartment.o] Error 1No rule to make target `biophysics/_biophysics.o', needed
>> by `moose'.  Stop.
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>
>
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