Re: [moose-generic] MOOSE_installation_problem

[Niraj D. <ni...@nc...>]

Hi Vadim,

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The errors you reported seem to be due to path issues. Can you check where the GSL and
HDF5 libraries have been installed? You may have to edit the Makefile to get it to work.
The library path has to be appended to the LIBS variable, and the include path to the
CXXFLAGS variable. In the current revision (r4433), the GSL section of the Makefile is
on line numbers 208-209, and the HDF5 section is at line numbers 262-263.

Best,
Niraj

>
> Hi
> I have python-2.7 with GSL and HDF5 libraries installed    but I am getting  a lot of
> errors every time I try to do "make BUILD=release" on CentOS 5.5  x86_64 x86_64 x86_64
> GNU/Linux
> We are trying to have it installed on the cluster and using "module" commands to load
> all libraries.
>
> Can somebody advice what might be missing ?  Thanks a lot in advance.
> Vadim.
>
> Here the error:
>
>
> MarkovChannel.cpp:16:27: error: gsl/gsl_errno.h: No such file or directory***
> [MarkovChannel.o] Error 1
>
> HDF5WriterBase.cpp:33:18: error: hdf5.h: No such file or directorymake[1]: ***
> [HDF5WriterBase.o] Error 1
>
> Stoich.cpp:42:27: error: gsl/gsl_errno.h: No such file or directorymake[1]: ***
> [Stoich.o] Error 1
>
> rtMultiCompartment.cpp:11:27: error: gsl/gsl_errno.h: No such file or
> directoryrtMultiCompartment.cpp:12:28: error: gsl/gsl_matrix.h: No such file or
> directoryrtMultiCompartment.cpp:13:27: error: gsl/gsl_odeiv.h: No such file or directory
> ../ksolve/OdeSystem.h:51: warning: ISO C++ forbids declaration of 'gsl_odeiv_step_type'
> with no type../ksolve/OdeSystem.h:51: error: expected ';' before '*'
> token../ksolve/OdeSystem.h:52: warning: ISO C++ forbids declaration of 'gsl_odeiv_step'
> with no type../ksolve/OdeSystem.h:52: error: expected ';' before '*'
> token../ksolve/OdeSystem.h:53: warning: ISO C++ forbids declaration of
> 'gsl_odeiv_control' with no type../ksolve/OdeSystem.h:53: error: expected ';' before '*'
> token../ksolve/OdeSystem.h:54: warning: ISO C++ forbids declaration of
> 'gsl_odeiv_evolve' with no type../ksolve/OdeSystem.h:54: error: expected ';' before '*'
> token../ksolve/OdeSystem.h:55: error: 'gsl_odeiv_system' does not name a type
> [rtMultiCompartment.o] Error 1No rule to make target `biophysics/_biophysics.o', needed
> by `moose'.  Stop.
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