#93 make_gene_catalog - sample.padded files

[Regina Umarova]

Hello,

We have installed MOCAT on HPC so everyone can run this software, but we are making MOCAT/data folder non-writable, so the users cannot modify this folder.

While running make_gene_catalog command, sample.padded files are copied to MOCAT/data folder which would lead to an error ('Permision Denied').
Is there a way to save sample.padded files into different directory created by a user.

Thank you,
Regina

[MOCAT]

Hi,

I no longer support MOCAT unfortunately and there’s no other developer.

I can’t remember. I doubt it. Possibly make a soft link to another writable
folder for the user and then have admin copy those new files to update the
original data folder.

There’s a setting for making a specific data_rownames folder you may also
want to look into.

Can’t help further this at this point. Good luck!!

On Thu, 5 Dec 2019 at 17:56, Regina Umarova rumarova@users.sourceforge.net
wrote:

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** [tickets:#93] make_gene_catalog - sample.padded files**

Status: New
Created: Thu Dec 05, 2019 04:56 PM UTC by Regina Umarova
Last Updated: Thu Dec 05, 2019 04:56 PM UTC
Owner: MOCAT

Hello,

We have installed MOCAT on HPC so everyone can run this software, but we
are making MOCAT/data folder non-writable, so the users cannot modify this
folder.

While running make_gene_catalog command, sample.padded files are
copied to MOCAT/data folder which would lead to an error ('Permision
Denied').
Is there a way to save sample.padded files into different directory
created by a user.

Thank you,
Regina

---

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[Regina Umarova]

Hello,

Thank you for your reply.
I have found the answer on MOCAT GitHub page. It can be found below on case someone is interested.

You need to add the following line in MOCAT.cfg file 'GLOBAL SETTINGS'

MOCAT_data_dir: /usr/desired_filder

Hope it will be helpful

Best,
Regina