#83 File::Sync module issue

[Patrick Seed]

Hi, I know this is a recurrent problem, but I'm hoping you can assist me here.

Using the mock community data set, I run the following command after the preceding ones:

MOCAT.pl -sf sample -p mOTU.v1.padded -r reads.processed -identity 97 -mode mOTU -o RESULTS

Despite installing the module File::Sync as per the MOCAT install instructions, I continue to get the following error in my log:

Can't locate loadable object for module File::Sync in @INC (@INC contains: /home/pcs3118/perl5/lib/perl5/5.16.3/x86_64-linux-thread-multi /home/pcs3118/perl5/lib/perl5/5.16.3 /home/pcs3118/perl5/lib/perl5/x86_64-linux-thread-multi /home/pcs3118/perl5/lib/perl5 /projects/b1051/Apps/MOCAT/src /projects/b1051/Apps/MOCAT/src /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /projects/b1051/Apps/MOCAT/src/MOCATProfiling/Threading.pm line 6.
Compilation failed in require at /projects/b1051/Apps/MOCAT/src/MOCATProfiling/Threading.pm line 6.
BEGIN failed--compilation aborted at /projects/b1051/Apps/MOCAT/src/MOCATProfiling/Threading.pm line 6.
Compilation failed in require at /projects/b1051/Apps/MOCAT//src/MOCATProfiling.pl line 210.
BEGIN failed--compilation aborted at /projects/b1051/Apps/MOCAT//src/MOCATProfiling.pl line 210.

When I confirm installation of File::Sync with cpan:

CPAN: Module::CoreList loaded ok (v2.76_02)
File::Sync is up to date (0.11)

and my $PERL5LIB variable seems correct: /home/pcs3118/perl5/lib/perl5:/projects/b1051/Apps/MOCAT/src:/projects/b1051/Apps/MOCAT/src

I feel like I've just about got MOCAT2 running expect for this problem of getting @INC to properly locate File::Sync.

Thank you!

[MOCAT]

I don't know where Filr::Sync is installed when you installed it. But look
inside all of the folders in the @INC. My guess is that somehow CPAN
installed it into a different folder. There are some instructions on the
download page of the official MOCAT website that you can try to (re)install
sync module.

On Sat, Feb 24, 2018 at 03:10 Patrick Seed pseed@users.sourceforge.net
wrote:

---

** [tickets:#83] File::Sync module issue**

Status: New
Created: Sat Feb 24, 2018 02:10 AM UTC by Patrick Seed
Last Updated: Sat Feb 24, 2018 02:10 AM UTC
Owner: MOCAT

Hi, I know this is a recurrent problem, but I'm hoping you can assist me
here.

Using the mock community data set, I run the following command after the
preceding ones:

MOCAT.pl -sf sample -p mOTU.v1.padded -r reads.processed -identity 97
-mode mOTU -o RESULTS

Despite installing the module File::Sync as per the MOCAT install
instructions, I continue to get the following error in my log:

Can't locate loadable object for module File::Sync in @INC (@INC contains:
/home/pcs3118/perl5/lib/perl5/5.16.3/x86_64-linux-thread-multi
/home/pcs3118/perl5/lib/perl5/5.16.3
/home/pcs3118/perl5/lib/perl5/x86_64-linux-thread-multi
/home/pcs3118/perl5/lib/perl5 /projects/b1051/Apps/MOCAT/src
/projects/b1051/Apps/MOCAT/src /usr/local/lib64/perl5
/usr/local/share/perl5 /usr/lib64/perl5/vendor_perl
/usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at
/projects/b1051/Apps/MOCAT/src/MOCATProfiling/Threading.pm line 6.
Compilation failed in require at
/projects/b1051/Apps/MOCAT/src/MOCATProfiling/Threading.pm line 6.
BEGIN failed--compilation aborted at
/projects/b1051/Apps/MOCAT/src/MOCATProfiling/Threading.pm line 6.
Compilation failed in require at
/projects/b1051/Apps/MOCAT//src/MOCATProfiling.pl line 210.
BEGIN failed--compilation aborted at
/projects/b1051/Apps/MOCAT//src/MOCATProfiling.pl line 210.

When I confirm installation of File::Sync with cpan:

CPAN: Module::CoreList loaded ok (v2.76_02)
File::Sync is up to date (0.11)

and my $PERL5LIB variable seems correct:
/home/pcs3118/perl5/lib/perl5:/projects/b1051/Apps/MOCAT/src:/projects/b1051/Apps/MOCAT/src

I feel like I've just about got MOCAT2 running expect for this problem of
getting @INC to properly locate File::Sync.

Thank you!

---

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[MOCAT]

Hi,

I've solved the issue on an Amazon Cloud instance by doing this:
1. Install CPAN: sudo yum install perl-CPAN
2. Install gcc: sudo yum install gcc
3. Install three modules:
cpan -i YAML
cpan -i -f File::Sync
cpan -i File::Slurp