#4 Execution error

[Aziz Ogutlu]

Dear Sir or Madam,
We're using miRDP2 on our HPC system. We're getting this error below when we run pipeline.bash:
Could you please help on this issue?

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Use of uninitialized value $id in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/convert_SAM_to_blast.pl line 87.
Use of uninitialized value $id in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/convert_SAM_to_blast.pl line 87.
Use of uninitialized value $id in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1222.
Use of uninitialized value $id in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1223.
Use of uninitialized value $id in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1224.
Use of uninitialized value $id in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1225.
Use of uninitialized value $subject_old in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 688.
Use of uninitialized value $lng in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 694.
Use of uninitialized value $subject_old in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 789.
Use of uninitialized value $subject_old in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 790.
Use of uninitialized value $subject_old in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 791.
Use of uninitialized value $query in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1046.
Use of uninitialized value $query in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1047.
Use of uninitialized value $query in hash element at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1036.
Use of uninitialized value $end in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1090.
Use of uninitialized value $beg in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1090.
Use of uninitialized value in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1094.
Use of uninitialized value $beg in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1094.
Use of uninitialized value $strand in string eq at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1097.
Use of uninitialized value $beg in subtraction (-) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1100.
Use of uninitialized value $beg in subtraction (-) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1100.
Use of uninitialized value $end in subtraction (-) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1100.
Use of uninitialized value $seq in substr at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1100.
Use of uninitialized value $end in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1114.
Use of uninitialized value $beg in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1114.
Use of uninitialized value in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1118.
Use of uninitialized value $beg in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1118.
Use of uninitialized value $strand in string eq at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1121.
Use of uninitialized value $beg in subtraction (-) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1124.
Use of uninitialized value $beg in subtraction (-) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1124.
Use of uninitialized value $end in subtraction (-) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1124.
Use of uninitialized value $struct in substr at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1124.
Use of uninitialized value $strand in string eq at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 955.
Use of uninitialized value $end in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1090.
Use of uninitialized value $beg in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1090.
Use of uninitialized value in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1094.
Use of uninitialized value $beg in numeric le (<=) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1094.
Use of uninitialized value $strand in string eq at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1097.
Use of uninitialized value $beg in subtraction (-) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1100.
Use of uninitialized value $beg in subtraction (-) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1100.
Use of uninitialized value $end in subtraction (-) at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1100.
Use of uninitialized value $seq in substr at /cta/capps/mirdeep-p2/1.1.4/scripts/mod-miRDP.pl line 1100.

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