#33 More than 2^31 skim hits would be taken ... this was not foreseen yet. *

[Jitendra Narayan]

Information on current assembly object:

AS_readpool: 78753938 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 184 (184 B)

Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 78753938 300 MiB 0 B 0 B
AS_skim_edges: 252666120 16.8 GiB 9.3 GiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 1 24 B 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 78753938 300 MiB 0 B 0 B
AS_clipright: 78753938 300 MiB 0 B 0 B
AS_used_ids: 78753938 75 MiB 0 B 6 B
AS_multicopies: 78753938 75 MiB 0 B 6 B
AS_hasmcoverlaps: 0 75 MiB 75 MiB 6 B
AS_maxcoveragereached: 78753938 300 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 78753938 75 MiB 0 B 6 B
AS_isdebris: 78753938 75 MiB 0 B 6 B
AS_needalloverlaps: 78753938 75 MiB 0 B 6 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 300 MiB 300 MiB 0 B
AS_probablermbsnotok: 0 300 MiB 300 MiB 0 B
AS_weakrmbsnotok: 0 300 MiB 300 MiB 0 B
AS_readmaytakeskim: 78753938 75 MiB 46 B 0 B
AS_skimstaken: 7231986740 6.7 GiB 12 B 0 B
AS_numskimoverlaps: 78753938 300 MiB 0 B 0 B
AS_numleftextendskims: 78753938 300 MiB 0 B 0 B
AS_rightextendskims: 78753938 300 MiB 0 B 0 B
AS_skimleftextendratio: 78753938 75 MiB 0 B 6 B
AS_skimrightextendratio: 78753938 75 MiB 0 B 6 B
AS_usedtmpfiles: 10 336 B 0 B 0 B
Total: 29129953184 (27.1 GiB)

================================================================================
Dynamic s allocs: 0
Dynamic m allocs: 0
Align allocs: 0

Internal logic/programming/debugging error (sigh this should not havehappened)

---

• More than 2^31 skim hits would be taken ... this was not foreseen yet. *
• Please contact the author. *

---

->Thrown: void Assembly::reduceSkimHits4(int32 version, const string prefix, const string postfix, const string logname)
->Caught: main

Aborting process, probably due to an internal error.

If you want to report the error, please do so on
http://sourceforge.net/p/mira-assembler/tickets/
and also give a short notice on the mira talk mailing list.

If reporting, please do not delete the log and checkpoint directories, there may
be files in them which could be needed to find the problem.
Subscribing / unsubscribing to mira talk, see: http://www.freelists.org/list/mira_talk

CWD: /data/cariou/assembly_Avaga_clean
Thank you for noticing that this is NOT a crash, but a
controlled program stop.
Failure, wrapped MIRA process aborted.