Sorry For some reason my issue is not being posted properly. But here it goes:
Hi,
I am running MIRA (4.9.6) to assemble a plant genome (260MB) with illumina and corrected PacBio data. I get the following error during alignment:
Internal logic/programming/debugging error (sigh this should not have happened)
->Thrown: void AlignedDualSeq::acquireSequences(const char * seq1, const char * seq2, readid_t id1, readid_t id2, int8 id1dir, int8 id2dir, bool enforce_clean_ends, bool dontpenalisengaps, int32 bandwidthused, int32 minbanddistance) ->Caught: void Align::fullAlign(std::list<AlignedDualSeq> * adslist, bool enforce_clean_ends, bool dontpenalisengaps)
I have put the full log here :
https://www.dropbox.com/s/47stfpkn14vgqm5/Assembly_MIRA_June13r.txt.zip?dl=0
Is there any way to continue the assembly?
Thanks,
Beatriz
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Sorry For some reason my issue is not being posted properly. But here it goes:
Hi,
I am running MIRA (4.9.6) to assemble a plant genome (260MB) with illumina and corrected PacBio data. I get the following error during alignment:
Internal logic/programming/debugging error (sigh this should not have
happened)
->Thrown: void AlignedDualSeq::acquireSequences(const char * seq1, const char * seq2, readid_t id1, readid_t id2, int8 id1dir, int8 id2dir, bool enforce_clean_ends, bool dontpenalisengaps, int32 bandwidthused, int32 minbanddistance)
->Caught: void Align::fullAlign(std::list<AlignedDualSeq> * adslist, bool enforce_clean_ends, bool dontpenalisengaps)
I have put the full log here :
https://www.dropbox.com/s/47stfpkn14vgqm5/Assembly_MIRA_June13r.txt.zip?dl=0
Is there any way to continue the assembly?
Thanks,
Beatriz