> Can you compare the two respective config.status files?
> If you see differences you cannot make sense of, can you send
> the broken one, after gzip'ing it?
> Usually things like that happen when sed or awk (used to transform
> config.h.in to config.h) can't match input strings, for line ending
> or other w32-related reasons.
The two config.status files are exactly identical (including line separators).