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#38 keep custom rginfo lines in vcf headers in synchrony with sample names

0.3
open
2019-03-14
2015-02-02
No

varcall is currently the only tool writing the MiModD-specific rginfo records to vcf headers. Other tools (i.e., vcf-filter and varextract), however, may change the sample names declared in a vcf file without updating the rginfo records.
The resulting inconsistency is silently ignored by the pyvcf module, but may cause trouble at some point.

Discussion

  • Wolfgang Maier

    Wolfgang Maier - 2015-05-22
    • Milestone: 0.1.6 --> 0.1.7
     
  • Wolfgang Maier

    Wolfgang Maier - 2015-09-09
    • Milestone: 0.1.7 --> 0.1.7.1
     
  • Wolfgang Maier

    Wolfgang Maier - 2015-10-13
    • Milestone: 0.1.7.1 --> 0.1.7.2
     
  • Wolfgang Maier

    Wolfgang Maier - 2016-01-25
    • Milestone: 0.1.7.2 --> 0.1.8
     
  • Wolfgang Maier

    Wolfgang Maier - 2016-08-08
    • Milestone: 0.1.8 --> 0.1.9
     
  • Wolfgang Maier

    Wolfgang Maier - 2018-03-17
    • Milestone: 0.1.9 --> 0.2
     
  • Wolfgang Maier

    Wolfgang Maier - 2019-03-14
    • Milestone: 0.2 --> 0.3
     
  • Wolfgang Maier

    Wolfgang Maier - 2019-03-14
    • labels: bug fix --> bug fix, library
     

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