CloudMap and MiModD - the advantage of working locally

The CloudMap Galaxy workflows rely on GATK tools such as the Unified Genotyper.
Over the past year, there have been numerous reports by users that this tool fails with out of memory errors on the main Galaxy server preventing users from running their workflows (see for example https://biostar.usegalaxy.org/p/10504/).

Remember: MiModD can fully replace the CloudMap workflows!

You will only need the CloudMap: Hawaiian Variant Mapping with WGS data tool on the main Galaxy server for visualizing the results.

[Wolfgang Maier]

Update: Current versions of MiModD can be used without any dependency on CloudMap at all since plotting is now part of the package.