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A new version of ChimeraSlayer has been released on sourceforge at:
It includes a bugfix related to bootstrap support computations and
certain parameters have been further optimized for use with short read
data (tested with reads as short as 200 bp). The recommended parameters
(now defaults) are: -T 1 --num_parents_test 3 -S 10
The set of trusted nearly full-length rRNA sequences are also improved
and thought to be relatively chimera-free. These sequences are a
compilation of both type-strain rRNAs from the Ribosomal Database
Project plus rRNA genes extracted from bacterial genome sequencing
projects. Find it here:
Please stay tuned for further updates.
Brian J. Haas
Manager, Bioinformatics Outreach, Genome Annotation and Analysis
The Broad Institute
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