Recent changes to lmpick

WikiPage lmpick modified by Gert Wollny

Gert Wollny — Tue, 27 Nov 2012 17:34:30 -0000

--- v15
+++ v16
@@ -1,7 +1,6 @@
 # LMpick - an iso surface viewer and landmark picker 
 
 lmpick us a tool to visualize iso-surfaces in volume data and to pick landmarks in these data sets. 
-The main screen of the software looks like this: 
 
 ## Requirements
 
@@ -10,6 +9,7 @@
 * Graphics card with at least 512 MB Texture memory 
 
 ## Tutorial 
+After starting the  program **mia-lmpick** The main screen of the software looks like this: 
 
 [[img src=mialmpick-initial-screen-750.jpg alt="mialmpickstart screen"]]
 
@@ -36,4 +36,3 @@
 Acknowledgements
  
 * [Example data set](https://sourceforge.net/projects/mia/files/Exampledata/lmpick-example-data.tar.xz)  Th Hierl and J. Hendricks, Department of Oral and Maxillo facial Plastic Surgery University of Leipzig, Leipzig, Germany
-

WikiPage lmpick modified by Gert Wollny

Gert Wollny — Tue, 27 Nov 2012 17:32:16 -0000

--- v14
+++ v15
@@ -2,6 +2,14 @@
 
 lmpick us a tool to visualize iso-surfaces in volume data and to pick landmarks in these data sets. 
 The main screen of the software looks like this: 
+
+## Requirements
+
+* Linux OS
+* OpenGL with OpenGL shading language support. 
+* Graphics card with at least 512 MB Texture memory 
+
+## Tutorial 
 
 [[img src=mialmpick-initial-screen-750.jpg alt="mialmpickstart screen"]]

WikiPage lmpick modified by Gert Wollny

Gert Wollny — Tue, 27 Nov 2012 17:29:03 -0000

--- v13
+++ v14
@@ -21,10 +21,11 @@
 
 Apart from the display of the landmark list, the right panel offers the possibility to load ans store landmark sets. The landmark set itself is stored in a XML file. The camera in the tool bar provides the shortcut to take a snapshot of the 3D view. The snapshots are stored in the current working directory and for each session, the files start with the number 0000.png. The second snapshot button enables taking a snapshot each time a landmark is set.
 
+[[img src=mialmpick-template-view-750.jpg alt="mialm template view"]]
+
 If the landmarks are set with the snapshot option enabled, the stored landmark records will also contain the absolute file path of the created snapshot image. If the so created landmark set is loaded later, for each landmark that also provides an image, the center part of the image is displayed below the landmark list providing an information about the anatomical location of the landmark. 
 
 Acknowledgements
  
 * [Example data set](https://sourceforge.net/projects/mia/files/Exampledata/lmpick-example-data.tar.xz)  Th Hierl and J. Hendricks, Department of Oral and Maxillo facial Plastic Surgery University of Leipzig, Leipzig, Germany
 
-

WikiPage lmpick modified by Gert Wollny

Gert Wollny — Tue, 27 Nov 2012 17:27:48 -0000

--- v12
+++ v13
@@ -21,6 +21,7 @@
 
 Apart from the display of the landmark list, the right panel offers the possibility to load ans store landmark sets. The landmark set itself is stored in a XML file. The camera in the tool bar provides the shortcut to take a snapshot of the 3D view. The snapshots are stored in the current working directory and for each session, the files start with the number 0000.png. The second snapshot button enables taking a snapshot each time a landmark is set.
 
+If the landmarks are set with the snapshot option enabled, the stored landmark records will also contain the absolute file path of the created snapshot image. If the so created landmark set is loaded later, for each landmark that also provides an image, the center part of the image is displayed below the landmark list providing an information about the anatomical location of the landmark. 
 
 Acknowledgements

WikiPage lmpick modified by Gert Wollny

Gert Wollny — Tue, 27 Nov 2012 12:48:05 -0000

--- v11
+++ v12
@@ -19,6 +19,8 @@
 
 [[img src=mialmpick-viewvol-lm-750.jpg alt="mialm volume and landmark"]]
 
+Apart from the display of the landmark list, the right panel offers the possibility to load ans store landmark sets. The landmark set itself is stored in a XML file. The camera in the tool bar provides the shortcut to take a snapshot of the 3D view. The snapshots are stored in the current working directory and for each session, the files start with the number 0000.png. The second snapshot button enables taking a snapshot each time a landmark is set.
+
 
 Acknowledgements

WikiPage lmpick modified by Gert Wollny

Gert Wollny — Tue, 27 Nov 2012 12:18:04 -0000

--- v10
+++ v11
@@ -17,7 +17,7 @@
 
 Now, by right-clicking in the 3D view, new landmarks can be defined and already defined landmarks can be set. If no landmark is selected in the landmark list to the right, a landmark can only be added and the user is prompted  to enter a name. After confirmation, the landmark is stored in the list. In addition to the name and its location, the landmark also carries the viewing information and the iso-value used for visualization. When selection a landmark in the list this information will be restored. Landmarks will usually be indicated by a yellow sphere in the 3D view, and, as a blue sphere if it is selected in the landmark list. Landmarks can also be added. deleted and there name changed via a context menu provided after right-clicking in the landmark list. The landmark list shows name and, if set 3D coordinates, otherwise the value *unknown* for each defined landmark. 
 
-[[img mialmpick-viewvol-lm-750.jpg alt="mialm volume and landmark"]]
+[[img src=mialmpick-viewvol-lm-750.jpg alt="mialm volume and landmark"]]
 
 
 Acknowledgements

WikiPage lmpick modified by Gert Wollny

Gert Wollny — Tue, 27 Nov 2012 12:17:39 -0000

--- v9
+++ v10
@@ -15,13 +15,13 @@
 
 [[img src=mialmpick-view-volume-750.jpg alt="mialmpick view volume"]]
 
+Now, by right-clicking in the 3D view, new landmarks can be defined and already defined landmarks can be set. If no landmark is selected in the landmark list to the right, a landmark can only be added and the user is prompted  to enter a name. After confirmation, the landmark is stored in the list. In addition to the name and its location, the landmark also carries the viewing information and the iso-value used for visualization. When selection a landmark in the list this information will be restored. Landmarks will usually be indicated by a yellow sphere in the 3D view, and, as a blue sphere if it is selected in the landmark list. Landmarks can also be added. deleted and there name changed via a context menu provided after right-clicking in the landmark list. The landmark list shows name and, if set 3D coordinates, otherwise the value *unknown* for each defined landmark. 
 
-
+[[img mialmpick-viewvol-lm-750.jpg alt="mialm volume and landmark"]]
 
 
 Acknowledgements
  
 * [Example data set](https://sourceforge.net/projects/mia/files/Exampledata/lmpick-example-data.tar.xz)  Th Hierl and J. Hendricks, Department of Oral and Maxillo facial Plastic Surgery University of Leipzig, Leipzig, Germany
 
-[[img mialmpick-viewvol-lm-750.jpg alt="mialm volume and landmark"]]

WikiPage lmpick modified by Gert Wollny

Gert Wollny — Tue, 27 Nov 2012 12:10:07 -0000

--- v8
+++ v9
@@ -22,3 +22,6 @@
 Acknowledgements
  
 * [Example data set](https://sourceforge.net/projects/mia/files/Exampledata/lmpick-example-data.tar.xz)  Th Hierl and J. Hendricks, Department of Oral and Maxillo facial Plastic Surgery University of Leipzig, Leipzig, Germany
+
+[[img mialmpick-viewvol-lm-750.jpg alt="mialm volume and landmark"]]
+

WikiPage lmpick modified by Gert Wollny

Gert Wollny — Tue, 27 Nov 2012 11:56:14 -0000

--- v7
+++ v8
@@ -6,10 +6,19 @@
 [[img src=mialmpick-initial-screen-750.jpg alt="mialmpickstart screen"]]
 
 To load a volume data set go to *File|Load Volume* to select a file. Currently, the only supported file format for volume data sets is the Vista file format, you can use [mia-3dimagefilter](http://mia.sourceforge.net/userref/ch02s08.html) to convert volume data from other [Supported file types] to a Vista Volume. After loading the volume, the 3D view can be manipulated by using the mouse: 
+
 * left click and dragging rotates the object,  
 * middle click and dragging shifts the object, and 
 * the scroll wheel can be used to adjust the zoom. 
-In addition, the iso-value for selecting the intensity can be changed by the scroll bar left to the view. 
+
+In addition, the iso-value for selecting the intensity can be changed by the scroll bar left to the view. After some adjustment a view like the one below can be obtained. 
 
 [[img src=mialmpick-view-volume-750.jpg alt="mialmpick view volume"]]
 
+
+
+
+
+Acknowledgements
+ 
+* [Example data set](https://sourceforge.net/projects/mia/files/Exampledata/lmpick-example-data.tar.xz)  Th Hierl and J. Hendricks, Department of Oral and Maxillo facial Plastic Surgery University of Leipzig, Leipzig, Germany

WikiPage lmpick modified by Gert Wollny

Gert Wollny — Tue, 27 Nov 2012 11:47:01 -0000

--- v6
+++ v7
@@ -11,5 +11,5 @@
 * the scroll wheel can be used to adjust the zoom. 
 In addition, the iso-value for selecting the intensity can be changed by the scroll bar left to the view. 
 
-[[img src=mialmpick-view-volume.jpg alt="mialmpick view volume"]]
+[[img src=mialmpick-view-volume-750.jpg alt="mialmpick view volume"]]