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Home modified by Gert Wollny

Gert Wollny — Fri, 23 Feb 2018 16:32:26 -0000

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+++ v47
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 [Publication list in BibTeX format](https://sourceforge.net/p/mia/wiki/Home/attachment/mia.bib)

+Christopher J. Dunmore, Gert Wollny, and Matthew M. Skinner, [MIA-Clustering: a novel method for segmentation of paleontological material](https://peerj.com/articles/4374/), [PeerJ](https://peerj.com/), 2018, DOI: [10.7717/peerj.4374](https://doi.org/10.7717/peerj.4374). 

-Brett R. Cowan, Edward DiBella, Sancgeetha Kulaseharan, Devavrat Likhite, Nils Noorman, Lennart Tautz, Nicholas Tustison, Gert Wollny, Alistair A. Young, and Avan Suinesiaputra, "[An Open Benchmark Challenge for Motion Correction of Myocardial Perfusion MRI](http://dx.doi.org/10.1109/JBHI.2016.2597145)", [IEEE Journal of Biomedical and Health Informatics](http://jbhi.embs.org/), *accepted for publication*
+
+Brett R. Cowan, Edward DiBella, Sancgeetha Kulaseharan, Devavrat Likhite, Nils Noorman, Lennart Tautz, Nicholas Tustison, Gert Wollny, Alistair A. Young, and Avan Suinesiaputra, "[An Open Benchmark Challenge for Motion Correction of Myocardial Perfusion MRI](http://dx.doi.org/10.1109/JBHI.2016.2597145)", [IEEE Journal of Biomedical and Health Informatics](http://jbhi.embs.org/), 21(5), 2017, DOI:[10.1109/JBHI.2016.2597145)](http://dx.doi.org/10.1109/JBHI.2016.2597145)

 Gert Wollny, Isabel Casanova, Maria-Jesus Ledesma-Carbayo, , and Andres Santos. On post-acquisition
 motion compensation for prostate perfusion analysis. bioRxiv - The preprint server for Biology, 2016.

Home modified by Gert Wollny

Gert Wollny — Wed, 08 Mar 2017 13:32:18 -0000

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 To continue reading please follow one of these links:

 * [An introduction and guide for Mia] including [Tutorials]
+* [Running mia-tools on MS Windows via Docker](https://sourceforge.net/p/mia/blog/2017/03/runnuing-mia-tools-by-using-docker-/)
 * [Command line tools](http://mia.sourceforge.net/userref/index.html)
 * [Doxygen generated reference](http://mia.sourceforge.net/libdoc/index.html)
 * [FAQ]

Home modified by Gert Wollny

Gert Wollny — Thu, 18 Aug 2016 09:57:26 -0000

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 [Publication list in BibTeX format](https://sourceforge.net/p/mia/wiki/Home/attachment/mia.bib)

-Brett R. Cowan, Edward DiBella, Sancgeetha Kulaseharan, Devavrat Likhite, Nils Noorman, Lennart Tautz, Nicholas Tustison, Gert Wollny, Alistair A. Young, and Avan Suinesiaputra, 
-[An Open Benchmark Challenge for Motion Correction of Myocardial Perfusion MRI](http://dx.doi.org/10.1109/JBHI.2016.2597145), [IEEE Journal of Biomedical and Health Informatics](http://jbhi.embs.org/), *accepted for publication*
+Brett R. Cowan, Edward DiBella, Sancgeetha Kulaseharan, Devavrat Likhite, Nils Noorman, Lennart Tautz, Nicholas Tustison, Gert Wollny, Alistair A. Young, and Avan Suinesiaputra, "[An Open Benchmark Challenge for Motion Correction of Myocardial Perfusion MRI](http://dx.doi.org/10.1109/JBHI.2016.2597145)", [IEEE Journal of Biomedical and Health Informatics](http://jbhi.embs.org/), *accepted for publication*

 Gert Wollny, Isabel Casanova, Maria-Jesus Ledesma-Carbayo, , and Andres Santos. On post-acquisition
 motion compensation for prostate perfusion analysis. bioRxiv - The preprint server for Biology, 2016.

Home modified by Gert Wollny

Gert Wollny — Thu, 18 Aug 2016 09:56:34 -0000

--- v43
+++ v44
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 [Publication list in BibTeX format](https://sourceforge.net/p/mia/wiki/Home/attachment/mia.bib)

+Brett R. Cowan, Edward DiBella, Sancgeetha Kulaseharan, Devavrat Likhite, Nils Noorman, Lennart Tautz, Nicholas Tustison, Gert Wollny, Alistair A. Young, and Avan Suinesiaputra, 
+[An Open Benchmark Challenge for Motion Correction of Myocardial Perfusion MRI](http://dx.doi.org/10.1109/JBHI.2016.2597145), [IEEE Journal of Biomedical and Health Informatics](http://jbhi.embs.org/), *accepted for publication*

 Gert Wollny, Isabel Casanova, Maria-Jesus Ledesma-Carbayo, , and Andres Santos. On post-acquisition
 motion compensation for prostate perfusion analysis. bioRxiv - The preprint server for Biology, 2016.
 DOI: [10.1101/037986](http://dx.doi.org/10.1101/037986).
-
-Brett R. Cowan, Edward DiBella, Sancgeetha Kulaseharan, Devavrat Likhite, Nils Noorman, Lennart Tautz, Nicholas Tustison, Gert Wollny, Alistair A. Young, and Avan Suinesiaputra, 
-[An Open Benchmark Challenge for Motion Correction of Myocardial Perfusion MRI](http://dx.doi.org/10.1109/JBHI.2016.2597145), [IEEE Journal of Biomedical and Health Informatics](http://jbhi.embs.org/), *accepted for publication*

 Wollny G and Ledesma-Carbayo M-J, ["Comparison of Linear and Non-linear 2D+T Registration Methods for DE-MRI Cardiac Perfusion Studies"](http://link.springer.com/chapter/10.1007/978-3-319-14678-2_3), In ["Statistical Atlases and Computational Models of the Heart - Imaging and Modelling Challenges"](http://link.springer.com/book/10.1007/978-3-319-14678-2), 5th International Workshop, STACOM 2014, Held in Conjunction with MICCAI 2014, LNCS 8896 (Eds. Oscar Camara et al), 21-31, Boston, MA, USA, Sept 18, 2014,  DOI:[10.1007/978-3-319-14678-2_3](http://dx.doi.org/10.1007/978-3-319-14678-2_3). ([preprint](http://mia.sourceforge.net/moco2014.pdf))

Home modified by Gert Wollny

Gert Wollny — Thu, 18 Aug 2016 09:55:56 -0000

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 [Publication list in BibTeX format](https://sourceforge.net/p/mia/wiki/Home/attachment/mia.bib)

+
+
 Gert Wollny, Isabel Casanova, Maria-Jesus Ledesma-Carbayo, , and Andres Santos. On post-acquisition
 motion compensation for prostate perfusion analysis. bioRxiv - The preprint server for Biology, 2016.
 DOI: [10.1101/037986](http://dx.doi.org/10.1101/037986).
+
+Brett R. Cowan, Edward DiBella, Sancgeetha Kulaseharan, Devavrat Likhite, Nils Noorman, Lennart Tautz, Nicholas Tustison, Gert Wollny, Alistair A. Young, and Avan Suinesiaputra, 
+[An Open Benchmark Challenge for Motion Correction of Myocardial Perfusion MRI](http://dx.doi.org/10.1109/JBHI.2016.2597145), [IEEE Journal of Biomedical and Health Informatics](http://jbhi.embs.org/), *accepted for publication*

 Wollny G and Ledesma-Carbayo M-J, ["Comparison of Linear and Non-linear 2D+T Registration Methods for DE-MRI Cardiac Perfusion Studies"](http://link.springer.com/chapter/10.1007/978-3-319-14678-2_3), In ["Statistical Atlases and Computational Models of the Heart - Imaging and Modelling Challenges"](http://link.springer.com/book/10.1007/978-3-319-14678-2), 5th International Workshop, STACOM 2014, Held in Conjunction with MICCAI 2014, LNCS 8896 (Eds. Oscar Camara et al), 21-31, Boston, MA, USA, Sept 18, 2014,  DOI:[10.1007/978-3-319-14678-2_3](http://dx.doi.org/10.1007/978-3-319-14678-2_3). ([preprint](http://mia.sourceforge.net/moco2014.pdf))

Home modified by Gert Wollny

Gert Wollny — Tue, 31 May 2016 16:20:26 -0000

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 Synopsis
 ---

-MIA is a collection of libraries and command line tools for the processing of gray scale images. The original version was developed at the [Max-Planck-Institute of Human Cognitive and Brain Scienes](http://www.cbs.mpg.de) as software accompanying the PhD thesis [G. Wollny, "Analysis of changes in temporal  series of medical images", PhD Thesis, University of Leipzig, 2003](http://mia.sourceforge.net/doku/diss.pdf  ). Further development was done within the [Department of Human Evolution](http://www.eva.mpg.de/evolution/) at the [Max-Planck-Institute for Evolutionary Anthropology](http://www.eva.mpg.de). and at the [ETSI Telecomunicación (UPM)](http://www.etsit.upm.es) within the group of [Biomedical Image Technologies](http://www.die.upm.es/im Biomedical). Corrent development is done on a solely voluntary basis. 
+MIA is a collection of libraries and command line tools for the processing of gray scale images. The original version was developed at the [Max-Planck-Institute of Human Cognitive and Brain Scienes](http://www.cbs.mpg.de) as software accompanying the PhD thesis [G. Wollny, "Analysis of changes in temporal  series of medical images", PhD Thesis, University of Leipzig, 2003](http://mia.sourceforge.net/doku/diss.pdf  ). Further development was done within the [Department of Human Evolution](http://www.eva.mpg.de/evolution/) at the [Max-Planck-Institute for Evolutionary Anthropology](http://www.eva.mpg.de). and at the [ETSI Telecomunicación (UPM)](http://www.etsit.upm.es) within the group of [Biomedical Image Technologies](http://www.die.upm.es/im Biomedical). Current development is done on a solely voluntary basis. 

 To continue reading please follow one of these links:

Home modified by Gert Wollny

Gert Wollny — Sun, 17 Apr 2016 18:09:22 -0000

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 Wollny G and Kellman P, ["Free breathing myocardial perfusion data sets for performance analysis of motion compensation algorithms"](http://www.gigasciencejournal.com/content/3/1/23), [GigaScience](http://www.gigasciencejournal.com/), 2014, 3:23 DOI:[10.1186/2047-217X-3-23](http://dx.doi.org/10.1186/2047-217X-3-23)

-Wollny G, Kellman P, Ledesma-Carbayo M-J, Skinner MM, Hublin J-J, Hierl Th, ["MIA - A Free and Open Source Software for Gray Scale Medical Image Analysis"](http://www.scfbm.org/content/8/October/2013), [Source Code for Biology and Medicine](http://www.scfbm.org/), 2013, 8:20, DOI:[10.1186/1751-0473-8-20](http://dx.doi.org/10.1186/1751-0473-8-20)
+Wollny G, Kellman P, Ledesma-Carbayo M-J, Skinner MM, Hublin J-J, Hierl Th, ["MIA - A Free and Open Source Software for Gray Scale Medical Image Analysis"](http://scfbm.biomedcentral.com/articles/10.1186/1751-0473-8-20), [Source Code for Biology and Medicine](http://www.scfbm.org/), 2013, 8:20, DOI:[10.1186/1751-0473-8-20](http://dx.doi.org/10.1186/1751-0473-8-20)

 G Wollny, M-J Ledesma-Carbayo and A Santos, ''MIA - A toolbox for Medical Image Analysis'', [Workshop on Open-Source Medical Image Analysis Software](http://www.cs.ucl.ac.uk/opensource_mia_ws_2012/program.html), Barcelona, Spain, 2012 ([abstract](http://mia.sourceforge.net/ossworkshop_abstract.pdf ), [poster](http://mia.sourceforge.net/ossworkshop_poster.pdf))

Home modified by Gert Wollny

Gert Wollny — Sun, 10 Apr 2016 10:56:37 -0000

--- v39
+++ v40
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 ---

 [Publication list in BibTeX format](https://sourceforge.net/p/mia/wiki/Home/attachment/mia.bib)
+
+Gert Wollny, Isabel Casanova, Maria-Jesus Ledesma-Carbayo, , and Andres Santos. On post-acquisition
+motion compensation for prostate perfusion analysis. bioRxiv - The preprint server for Biology, 2016.
+DOI: [10.1101/037986](http://dx.doi.org/10.1101/037986).

 Wollny G and Ledesma-Carbayo M-J, ["Comparison of Linear and Non-linear 2D+T Registration Methods for DE-MRI Cardiac Perfusion Studies"](http://link.springer.com/chapter/10.1007/978-3-319-14678-2_3), In ["Statistical Atlases and Computational Models of the Heart - Imaging and Modelling Challenges"](http://link.springer.com/book/10.1007/978-3-319-14678-2), 5th International Workshop, STACOM 2014, Held in Conjunction with MICCAI 2014, LNCS 8896 (Eds. Oscar Camara et al), 21-31, Boston, MA, USA, Sept 18, 2014,  DOI:[10.1007/978-3-319-14678-2_3](http://dx.doi.org/10.1007/978-3-319-14678-2_3). ([preprint](http://mia.sourceforge.net/moco2014.pdf))

Home modified by Gert Wollny

Gert Wollny — Sun, 10 Apr 2016 10:54:45 -0000

--- v38
+++ v39
@@ -9,7 +9,7 @@
 Synopsis
 ---

-MIA is a collection of libraries and command line tools for the processing of gray scale images. The original version was developed at the [Max-Planck-Institute of Human Cognitive and Brain Scienes](http://www.cbs.mpg.de) as software accompanying the PhD thesis [G. Wollny, "Analysis of changes in temporal  series of medical images", PhD Thesis, University of Leipzig, 2003](http://mia.sourceforge.net/doku/diss.pdf  ). Further development was done within the [Department of Human Evolution](http://www.eva.mpg.de/evolution/) at the [Max-Planck-Institute for Evolutionary Anthropology](http://www.eva.mpg.de). Currently, development continues at the [ETSI Telecomunicación (UPM)](http://www.etsit.upm.es) within the group of [Biomedical Image Technologies](http://www.die.upm.es/im Biomedical).
+MIA is a collection of libraries and command line tools for the processing of gray scale images. The original version was developed at the [Max-Planck-Institute of Human Cognitive and Brain Scienes](http://www.cbs.mpg.de) as software accompanying the PhD thesis [G. Wollny, "Analysis of changes in temporal  series of medical images", PhD Thesis, University of Leipzig, 2003](http://mia.sourceforge.net/doku/diss.pdf  ). Further development was done within the [Department of Human Evolution](http://www.eva.mpg.de/evolution/) at the [Max-Planck-Institute for Evolutionary Anthropology](http://www.eva.mpg.de). and at the [ETSI Telecomunicación (UPM)](http://www.etsit.upm.es) within the group of [Biomedical Image Technologies](http://www.die.upm.es/im Biomedical). Corrent development is done on a solely voluntary basis. 

 To continue reading please follow one of these links:

Home modified by Gert Wollny

Gert Wollny — Sun, 10 Apr 2016 10:52:57 -0000

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 Mia - A tool chain for Medical Image Analysis
 ===
-[![Build Status](https://travis-ci.org/gerddie/mia.svg?branch=master)](https://travis-ci.org/gerddie/mia)
-[![Coverity Status](https://scan.coverity.com/projects/1013/badge.svg)](https://scan.coverity.com/projects/medical-image-analysis)
-[![Coverage Status](https://coveralls.io/repos/github/gerddie/mia/badge.svg?branch=master)](https://coveralls.io/github/gerddie/mia?branch=master)
+[![Build Status](https://travis-ci.org/gerddie/mia.svg?branch=master)](https://travis-ci.org/gerddie/mia) [![Coverity Status](https://scan.coverity.com/projects/1013/badge.svg)](https://scan.coverity.com/projects/medical-image-analysis) [![Coverage Status](https://coveralls.io/repos/github/gerddie/mia/badge.svg?branch=master)](https://coveralls.io/github/gerddie/mia?branch=master)

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