Recent changes to Home

Home modified by wazimismail

wazimismail — Thu, 06 Mar 2014 04:46:47 -0000

--- v3
+++ v4
@@ -1,4 +1,4 @@
-Updates in version 1.1
+Updates in version 1.0
 ----------------------
 1. Support for HMMER3 has been included
 2. MGEScan-LTR and MGEScan-nonLTR are wrapped-up using a single script. So, now you can run both the programs using the same script.

Home modified by wazimismail

wazimismail — Thu, 06 Mar 2014 04:45:43 -0000

--- v2
+++ v3
@@ -1,14 +1,18 @@
 Updates in version 1.1
+----------------------
 1. Support for HMMER3 has been included
 2. MGEScan-LTR and MGEScan-nonLTR are wrapped-up using a single script. So, now you can run both the programs using the same script.

+Description
+-----------
 MGEScan is a suite of two software tools MGEScan-LTR and MGEScan-non-LTR. 

 MGEScan-LTR is a software that can identify new LTR retrotransposons without relying on a library of known elements. It uses approximate string matching technique and protein domain analysis to detect intact LTR retrotransposons. In addition, it identifies partially deleted or solo LTRs using profile Hidden Markov Models (pHMMs).

 MGEScan-non-LTR is a software for the identification of non-LTR retrotransposons in genomic sequences, following a computational approach inspired by a generalized hidden Markov model (GHMM).

-References:
+References
+----------
 1. M. Rho et al., "De novo identification of LTR retrotransposons in eukaryotic genomes", BMC Genomics (2007) 8:90.

 2. M. Rho and H. Tang, "MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes", Nucleic Acids Research (2009) 37:21.

Home modified by wazimismail

wazimismail — Thu, 06 Mar 2014 04:42:25 -0000

--- v1
+++ v2
@@ -1,8 +1,17 @@
-Welcome to your wiki!
+Updates in version 1.1
+1. Support for HMMER3 has been included
+2. MGEScan-LTR and MGEScan-nonLTR are wrapped-up using a single script. So, now you can run both the programs using the same script.

-This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].
+MGEScan is a suite of two software tools MGEScan-LTR and MGEScan-non-LTR. 

-The wiki uses [Markdown](/p/mgescan/wiki/markdown_syntax/) syntax.
+MGEScan-LTR is a software that can identify new LTR retrotransposons without relying on a library of known elements. It uses approximate string matching technique and protein domain analysis to detect intact LTR retrotransposons. In addition, it identifies partially deleted or solo LTRs using profile Hidden Markov Models (pHMMs).

-[[members limit=20]]
+MGEScan-non-LTR is a software for the identification of non-LTR retrotransposons in genomic sequences, following a computational approach inspired by a generalized hidden Markov model (GHMM).
+
+References:
+1. M. Rho et al., "De novo identification of LTR retrotransposons in eukaryotic genomes", BMC Genomics (2007) 8:90.
+
+2. M. Rho and H. Tang, "MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes", Nucleic Acids Research (2009) 37:21.
+
+
 [[download_button]]

Home modified by wazimismail

wazimismail — Sun, 02 Mar 2014 05:45:28 -0000

Welcome to your wiki!

This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].

The wiki uses Markdown syntax.

Project Members:

wazimismail (admin)