Menu
▾
▴
mged-mage
|
From: Miller, M. D (Rosetta) <Michael_Miller@Rosettabio.com> - 2006-07-24 15:20:25
|
Hi All, This was what I was hoping to put out as part of an agenda early next month--in fact I would love if there were a teleconference around August 21st to do a presorting out of issues for MAGEv2. I'm off for vacation next week and a half but when I return I'll start gathering other potential agenda items for MAGEstk and MAGE-TAB and any other items people are interested in. cheers, Michael > -----Original Message----- > From: mge...@li...=20 > [mailto:mge...@li...] On Behalf=20 > Of Helen Parkinson > Sent: Monday, July 24, 2006 12:59 AM > To: Ugis Sarkans > Cc: mged-mage2 > Subject: Re: [Mged-mage2] Meeting Report for MAGEModelling Meeting >=20 >=20 > Hi all, >=20 > can we use these and Michael's comments on Array etc as an agenda for=20 > the next meeting - I assume this will be at the MGED Jamboree=20 > in Seattle? >=20 > cheers >=20 > Helen >=20 > Ugis Sarkans wrote: > > Hi all, > > > > Following up on what I promised to do in the meeting: > > > > 1) A cleaned-up version of the model has been posted on=20 > > http://www.mged.org/Workgroups/MAGE/magev2.html > > > > a) Associations from ArrayManufacture, Hybridization,=20 > ImageAcquisition=20 > > and MeasuredDataExtraction to > > GenericProtocol have been added, derived from=20 > > ProtocolApplication->Protocol. Data Transformation already > > had that, and I didn't touch HLA. > > > > b) general cleanup of diagrams in Array and Data packages -=20 > again didn't=20 > > touch HLA. QPCR is not finished. > > > > c) Michael enquired about some unnamed assoications in the=20 > Array diagram=20 > > - I think this is not quite finished > > either, especially in the light of changes to=20 > DesignElements. I still=20 > > think that a concept of MaterialReporter would > > make sense, and ArrayFeatureMaterial should go. > > > > d) Some small issues I found: > > - ArrayImage - needs format, since it derives directly=20 > from Data,=20 > > not ExternalData > > - If we want to support post-ImageAcquisition manipulations of=20 > > HybridizedArray (e.g. another > > ImageAcquisition) like in MAGEv1, then ImageAcquisition should have=20 > > outputMaterial HybridizedArray, not > > just outputData. > > > > 2) Mapping v1 to v2. > > > > I'm trying to describe mapping as a series of diagrams that=20 > show how=20 > > various structures of MAGEv1 (objects+links+ > > attribute values) should be translated into MAGEv2 structures. 6=20 > > diagrams are in > > > > http://www.ebi.ac.uk/~ugis/MAGEmapping/ > > > > This is not finished, I haven't > > done any explaining text, but I hope that this way the=20 > explanation might=20 > > be easier than when there are only bits > > of object models to look at. Feedback welcome on both the=20 > approach and=20 > > details of the mapping - there are some > > hard bits when dealing with BioAssays. I'll not be able to=20 > do anything=20 > > else with this now till September though. > > > > Cheers, > > Ugis > > > > > > > > > > > > > > > > Helen Parkinson wrote: > > > > =20 > >> Hi > >> > >> a draft version of the meeting report with action items=20 > and comments=20 > >> =20 > > >from Ugis and Andy Jones has now been posted: > > =20 > >> www.ebi.ac.uk/~parkinso/MAGE2_modelling_Meeting_Report2_aj.doc > >> > >> MAGE2_modelling_Meeting_Report2_aj.doc=20 > <http://www.ebi.ac.uk/%7Eparkinso/MAGE2_modelling_Meeting_Repo > rt2_aj.doc>=20 > >> > >> > >> > >> Final version UML model edited by Ugis is also posted: > >> > >> www.ebi.ac.uk/~parkinso/MAGEv2_uml20_2006_07_13.zip > >> > >> MAGEv2_uml20_2006_07_13.zip=20 > <http://www.ebi.ac.uk/%7Eparkinso/MAGEv2_uml20_2006_07_13.zip>=20 > >> > >> > >> > >> cheers > >> > >> Helen > >> > >> =20 > >> > >> =20 > > > > > >=20 > -------------------------------------------------------------- > ----------- > > Take Surveys. Earn Cash. Influence the Future of IT > > Join SourceForge.net's Techsay panel and you'll get the=20 > chance to share your > > opinions on IT & business topics through brief surveys --=20 > and earn cash > >=20 > http://www.techsay.com/default.php?page=3Djoin.php&p=3Dsourceforge &CID=3DDEVDEV > _______________________________________________ > Mged-MAGE2 mailing list > Mge...@li... > https://lists.sourceforge.net/lists/listinfo/mged-mage2 > =20 --=20 Helen Parkinson, PhD Curation Coordinator Microarray Informatics Team,=20 EBI and Seconded Scientific Programme Manager NCRI Cancer Informatics Initiative www.cancerinformatics.org.uk Tel: EBI 01223 494672 Skype: helen.parkinson.ebi ------------------------------------------------------------------------ - Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys -- and earn cash http://www.techsay.com/default.php?page=3Djoin.php&p=3Dsourceforge&CID=3D= DEVDE V _______________________________________________ Mged-MAGE2 mailing list Mge...@li... https://lists.sourceforge.net/lists/listinfo/mged-mage2 |
|
From: Helen P. <par...@eb...> - 2006-07-24 15:24:19
|
Michael, that works for me, Ugis is probably away though, anyone else? cheers Helen Miller, Michael D (Rosetta) wrote: > Hi All, > > This was what I was hoping to put out as part of an agenda early next > month--in fact I would love if there were a teleconference around August > 21st to do a presorting out of issues for MAGEv2. I'm off for vacation > next week and a half but when I return I'll start gathering other > potential agenda items for MAGEstk and MAGE-TAB and any other items > people are interested in. > > cheers, > Michael > > >> -----Original Message----- >> From: mge...@li... >> [mailto:mge...@li...] On Behalf >> Of Helen Parkinson >> Sent: Monday, July 24, 2006 12:59 AM >> To: Ugis Sarkans >> Cc: mged-mage2 >> Subject: Re: [Mged-mage2] Meeting Report for MAGEModelling Meeting >> >> >> Hi all, >> >> can we use these and Michael's comments on Array etc as an agenda for >> the next meeting - I assume this will be at the MGED Jamboree >> in Seattle? >> >> cheers >> >> Helen >> >> Ugis Sarkans wrote: >> >>> Hi all, >>> >>> Following up on what I promised to do in the meeting: >>> >>> 1) A cleaned-up version of the model has been posted on >>> http://www.mged.org/Workgroups/MAGE/magev2.html >>> >>> a) Associations from ArrayManufacture, Hybridization, >>> >> ImageAcquisition >> >>> and MeasuredDataExtraction to >>> GenericProtocol have been added, derived from >>> ProtocolApplication->Protocol. Data Transformation already >>> had that, and I didn't touch HLA. >>> >>> b) general cleanup of diagrams in Array and Data packages - >>> >> again didn't >> >>> touch HLA. QPCR is not finished. >>> >>> c) Michael enquired about some unnamed assoications in the >>> >> Array diagram >> >>> - I think this is not quite finished >>> either, especially in the light of changes to >>> >> DesignElements. I still >> >>> think that a concept of MaterialReporter would >>> make sense, and ArrayFeatureMaterial should go. >>> >>> d) Some small issues I found: >>> - ArrayImage - needs format, since it derives directly >>> >> from Data, >> >>> not ExternalData >>> - If we want to support post-ImageAcquisition manipulations of >>> HybridizedArray (e.g. another >>> ImageAcquisition) like in MAGEv1, then ImageAcquisition should have >>> outputMaterial HybridizedArray, not >>> just outputData. >>> >>> 2) Mapping v1 to v2. >>> >>> I'm trying to describe mapping as a series of diagrams that >>> >> show how >> >>> various structures of MAGEv1 (objects+links+ >>> attribute values) should be translated into MAGEv2 structures. 6 >>> diagrams are in >>> >>> http://www.ebi.ac.uk/~ugis/MAGEmapping/ >>> >>> This is not finished, I haven't >>> done any explaining text, but I hope that this way the >>> >> explanation might >> >>> be easier than when there are only bits >>> of object models to look at. Feedback welcome on both the >>> >> approach and >> >>> details of the mapping - there are some >>> hard bits when dealing with BioAssays. I'll not be able to >>> >> do anything >> >>> else with this now till September though. >>> >>> Cheers, >>> Ugis >>> >>> >>> >>> >>> >>> >>> >>> Helen Parkinson wrote: >>> >>> >>> >>>> Hi >>>> >>>> a draft version of the meeting report with action items >>>> >> and comments >> >>>> >>>> >>> >from Ugis and Andy Jones has now been posted: >>> >>> >>>> www.ebi.ac.uk/~parkinso/MAGE2_modelling_Meeting_Report2_aj.doc >>>> >>>> MAGE2_modelling_Meeting_Report2_aj.doc >>>> >> <http://www.ebi.ac.uk/%7Eparkinso/MAGE2_modelling_Meeting_Repo >> rt2_aj.doc> >> >>>> >>>> Final version UML model edited by Ugis is also posted: >>>> >>>> www.ebi.ac.uk/~parkinso/MAGEv2_uml20_2006_07_13.zip >>>> >>>> MAGEv2_uml20_2006_07_13.zip >>>> >> <http://www.ebi.ac.uk/%7Eparkinso/MAGEv2_uml20_2006_07_13.zip> >> >>>> >>>> cheers >>>> >>>> Helen >>>> >>>> >>>> >>>> >>>> >>> >>> >> -------------------------------------------------------------- >> ----------- >> >>> Take Surveys. Earn Cash. Influence the Future of IT >>> Join SourceForge.net's Techsay panel and you'll get the >>> >> chance to share your >> >>> opinions on IT & business topics through brief surveys -- >>> >> and earn cash >> >> http://www.techsay.com/default.php?page=join.php&p=sourceforge >> > &CID=DEVDEV > >> _______________________________________________ >> Mged-MAGE2 mailing list >> Mge...@li... >> https://lists.sourceforge.net/lists/listinfo/mged-mage2 >> >> > > -- Helen Parkinson, PhD Curation Coordinator Microarray Informatics Team, EBI and Seconded Scientific Programme Manager NCRI Cancer Informatics Initiative www.cancerinformatics.org.uk Tel: EBI 01223 494672 Skype: helen.parkinson.ebi |
|
From: <ro...@eb...> - 2006-07-24 15:49:25
|
Hi Michael, I should be able to join in Thanks Philippe > Michael, > > that works for me, Ugis is probably away though, anyone else? > > cheers > > Helen > > Miller, Michael D (Rosetta) wrote: >> Hi All, >> >> This was what I was hoping to put out as part of an agenda early next >> month--in fact I would love if there were a teleconference around August >> 21st to do a presorting out of issues for MAGEv2. I'm off for vacation >> next week and a half but when I return I'll start gathering other >> potential agenda items for MAGEstk and MAGE-TAB and any other items >> people are interested in. >> >> cheers, >> Michael >> >> >>> -----Original Message----- >>> From: mge...@li... >>> [mailto:mge...@li...] On Behalf >>> Of Helen Parkinson >>> Sent: Monday, July 24, 2006 12:59 AM >>> To: Ugis Sarkans >>> Cc: mged-mage2 >>> Subject: Re: [Mged-mage2] Meeting Report for MAGEModelling Meeting >>> >>> >>> Hi all, >>> >>> can we use these and Michael's comments on Array etc as an agenda for >>> the next meeting - I assume this will be at the MGED Jamboree >>> in Seattle? >>> >>> cheers >>> >>> Helen >>> >>> Ugis Sarkans wrote: >>> >>>> Hi all, >>>> >>>> Following up on what I promised to do in the meeting: >>>> >>>> 1) A cleaned-up version of the model has been posted on >>>> http://www.mged.org/Workgroups/MAGE/magev2.html >>>> >>>> a) Associations from ArrayManufacture, Hybridization, >>>> >>> ImageAcquisition >>> >>>> and MeasuredDataExtraction to >>>> GenericProtocol have been added, derived from >>>> ProtocolApplication->Protocol. Data Transformation already >>>> had that, and I didn't touch HLA. >>>> >>>> b) general cleanup of diagrams in Array and Data packages - >>>> >>> again didn't >>> >>>> touch HLA. QPCR is not finished. >>>> >>>> c) Michael enquired about some unnamed assoications in the >>>> >>> Array diagram >>> >>>> - I think this is not quite finished >>>> either, especially in the light of changes to >>>> >>> DesignElements. I still >>> >>>> think that a concept of MaterialReporter would >>>> make sense, and ArrayFeatureMaterial should go. >>>> >>>> d) Some small issues I found: >>>> - ArrayImage - needs format, since it derives directly >>>> >>> from Data, >>> >>>> not ExternalData >>>> - If we want to support post-ImageAcquisition manipulations of >>>> HybridizedArray (e.g. another >>>> ImageAcquisition) like in MAGEv1, then ImageAcquisition should have >>>> outputMaterial HybridizedArray, not >>>> just outputData. >>>> >>>> 2) Mapping v1 to v2. >>>> >>>> I'm trying to describe mapping as a series of diagrams that >>>> >>> show how >>> >>>> various structures of MAGEv1 (objects+links+ >>>> attribute values) should be translated into MAGEv2 structures. 6 >>>> diagrams are in >>>> >>>> http://www.ebi.ac.uk/~ugis/MAGEmapping/ >>>> >>>> This is not finished, I haven't >>>> done any explaining text, but I hope that this way the >>>> >>> explanation might >>> >>>> be easier than when there are only bits >>>> of object models to look at. Feedback welcome on both the >>>> >>> approach and >>> >>>> details of the mapping - there are some >>>> hard bits when dealing with BioAssays. I'll not be able to >>>> >>> do anything >>> >>>> else with this now till September though. >>>> >>>> Cheers, >>>> Ugis >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> Helen Parkinson wrote: >>>> >>>> >>>> >>>>> Hi >>>>> >>>>> a draft version of the meeting report with action items >>>>> >>> and comments >>> >>>>> >>>>> >>>> >from Ugis and Andy Jones has now been posted: >>>> >>>> >>>>> www.ebi.ac.uk/~parkinso/MAGE2_modelling_Meeting_Report2_aj.doc >>>>> >>>>> MAGE2_modelling_Meeting_Report2_aj.doc >>>>> >>> <http://www.ebi.ac.uk/%7Eparkinso/MAGE2_modelling_Meeting_Repo >>> rt2_aj.doc> >>> >>>>> >>>>> Final version UML model edited by Ugis is also posted: >>>>> >>>>> www.ebi.ac.uk/~parkinso/MAGEv2_uml20_2006_07_13.zip >>>>> >>>>> MAGEv2_uml20_2006_07_13.zip >>>>> >>> <http://www.ebi.ac.uk/%7Eparkinso/MAGEv2_uml20_2006_07_13.zip> >>> >>>>> >>>>> cheers >>>>> >>>>> Helen >>>>> >>>>> >>>>> >>>>> >>>>> >>>> >>>> >>> -------------------------------------------------------------- >>> ----------- >>> >>>> Take Surveys. Earn Cash. Influence the Future of IT >>>> Join SourceForge.net's Techsay panel and you'll get the >>>> >>> chance to share your >>> >>>> opinions on IT & business topics through brief surveys -- >>>> >>> and earn cash >>> >>> http://www.techsay.com/default.php?page=join.php&p=sourceforge >>> >> &CID=DEVDEV >> >>> _______________________________________________ >>> Mged-MAGE2 mailing list >>> Mge...@li... >>> https://lists.sourceforge.net/lists/listinfo/mged-mage2 >>> >>> >> >> > > -- > Helen Parkinson, PhD > Curation Coordinator > Microarray Informatics Team, > EBI > > and > > Seconded Scientific Programme Manager > NCRI Cancer Informatics Initiative > www.cancerinformatics.org.uk > > Tel: > EBI 01223 494672 > Skype: helen.parkinson.ebi > > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share > your > opinions on IT & business topics through brief surveys -- and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > Mged-mage mailing list > Mge...@li... > https://lists.sourceforge.net/lists/listinfo/mged-mage > |
|
From: Joe W. <jw...@ji...> - 2006-07-25 08:28:52
|
Hi, August 21st is ok for me. Joe Helen Parkinson wrote: >Michael, > >that works for me, Ugis is probably away though, anyone else? > >cheers > >Helen > >Miller, Michael D (Rosetta) wrote: > > >>Hi All, >> >>This was what I was hoping to put out as part of an agenda early next >>month--in fact I would love if there were a teleconference around August >>21st to do a presorting out of issues for MAGEv2. I'm off for vacation >>next week and a half but when I return I'll start gathering other >>potential agenda items for MAGEstk and MAGE-TAB and any other items >>people are interested in. >> >>cheers, >>Michael >> >> >> >> >>>-----Original Message----- >>>From: mge...@li... >>>[mailto:mge...@li...] On Behalf >>>Of Helen Parkinson >>>Sent: Monday, July 24, 2006 12:59 AM >>>To: Ugis Sarkans >>>Cc: mged-mage2 >>>Subject: Re: [Mged-mage2] Meeting Report for MAGEModelling Meeting >>> >>> >>>Hi all, >>> >>>can we use these and Michael's comments on Array etc as an agenda for >>>the next meeting - I assume this will be at the MGED Jamboree >>>in Seattle? >>> >>>cheers >>> >>>Helen >>> >>>Ugis Sarkans wrote: >>> >>> >>> >>>>Hi all, >>>> >>>>Following up on what I promised to do in the meeting: >>>> >>>>1) A cleaned-up version of the model has been posted on >>>>http://www.mged.org/Workgroups/MAGE/magev2.html >>>> >>>>a) Associations from ArrayManufacture, Hybridization, >>>> >>>> >>>> >>>ImageAcquisition >>> >>> >>> >>>>and MeasuredDataExtraction to >>>>GenericProtocol have been added, derived from >>>>ProtocolApplication->Protocol. Data Transformation already >>>>had that, and I didn't touch HLA. >>>> >>>>b) general cleanup of diagrams in Array and Data packages - >>>> >>>> >>>> >>>again didn't >>> >>> >>> >>>>touch HLA. QPCR is not finished. >>>> >>>>c) Michael enquired about some unnamed assoications in the >>>> >>>> >>>> >>>Array diagram >>> >>> >>> >>>>- I think this is not quite finished >>>>either, especially in the light of changes to >>>> >>>> >>>> >>>DesignElements. I still >>> >>> >>> >>>>think that a concept of MaterialReporter would >>>>make sense, and ArrayFeatureMaterial should go. >>>> >>>>d) Some small issues I found: >>>> - ArrayImage - needs format, since it derives directly >>>> >>>> >>>> >>>from Data, >>> >>> >>> >>>>not ExternalData >>>> - If we want to support post-ImageAcquisition manipulations of >>>>HybridizedArray (e.g. another >>>>ImageAcquisition) like in MAGEv1, then ImageAcquisition should have >>>>outputMaterial HybridizedArray, not >>>>just outputData. >>>> >>>>2) Mapping v1 to v2. >>>> >>>>I'm trying to describe mapping as a series of diagrams that >>>> >>>> >>>> >>>show how >>> >>> >>> >>>>various structures of MAGEv1 (objects+links+ >>>>attribute values) should be translated into MAGEv2 structures. 6 >>>>diagrams are in >>>> >>>>http://www.ebi.ac.uk/~ugis/MAGEmapping/ >>>> >>>>This is not finished, I haven't >>>>done any explaining text, but I hope that this way the >>>> >>>> >>>> >>>explanation might >>> >>> >>> >>>>be easier than when there are only bits >>>>of object models to look at. Feedback welcome on both the >>>> >>>> >>>> >>>approach and >>> >>> >>> >>>>details of the mapping - there are some >>>>hard bits when dealing with BioAssays. I'll not be able to >>>> >>>> >>>> >>>do anything >>> >>> >>> >>>>else with this now till September though. >>>> >>>>Cheers, >>>>Ugis >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>>Helen Parkinson wrote: >>>> >>>> >>>> >>>> >>>> >>>>>Hi >>>>> >>>>>a draft version of the meeting report with action items >>>>> >>>>> >>>>> >>>and comments >>> >>> >>> >>>>> >>>>> >>>>> >>>>> >>>>>from Ugis and Andy Jones has now been posted: >>>> >>>> >>>> >>>> >>>>>www.ebi.ac.uk/~parkinso/MAGE2_modelling_Meeting_Report2_aj.doc >>>>> >>>>>MAGE2_modelling_Meeting_Report2_aj.doc >>>>> >>>>> >>>>> >>><http://www.ebi.ac.uk/%7Eparkinso/MAGE2_modelling_Meeting_Repo >>>rt2_aj.doc> >>> >>> >>> >>>>>Final version UML model edited by Ugis is also posted: >>>>> >>>>>www.ebi.ac.uk/~parkinso/MAGEv2_uml20_2006_07_13.zip >>>>> >>>>>MAGEv2_uml20_2006_07_13.zip >>>>> >>>>> >>>>> >>><http://www.ebi.ac.uk/%7Eparkinso/MAGEv2_uml20_2006_07_13.zip> >>> >>> >>> >>>>>cheers >>>>> >>>>>Helen >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>> >>>> >>>> >>>-------------------------------------------------------------- >>>----------- >>> >>> >>> >>>>Take Surveys. Earn Cash. Influence the Future of IT >>>>Join SourceForge.net's Techsay panel and you'll get the >>>> >>>> >>>> >>>chance to share your >>> >>> >>> >>>>opinions on IT & business topics through brief surveys -- >>>> >>>> >>>> >>>and earn cash >>> >>>http://www.techsay.com/default.php?page=join.php&p=sourceforge >>> >>> >>> >>&CID=DEVDEV >> >> >> >>>_______________________________________________ >>>Mged-MAGE2 mailing list >>>Mge...@li... >>>https://lists.sourceforge.net/lists/listinfo/mged-mage2 >>> >>> >>> >>> >> >> >> > > > |
|
From: Junmin L. <ju...@pc...> - 2006-07-28 20:19:48
|
I will try to make it. ---junmin On Mon, 24 Jul 2006, Helen Parkinson wrote: > Michael, > > that works for me, Ugis is probably away though, anyone else? > > cheers > > Helen > > Miller, Michael D (Rosetta) wrote: >> Hi All, >> >> This was what I was hoping to put out as part of an agenda early next >> month--in fact I would love if there were a teleconference around August >> 21st to do a presorting out of issues for MAGEv2. I'm off for vacation >> next week and a half but when I return I'll start gathering other >> potential agenda items for MAGEstk and MAGE-TAB and any other items >> people are interested in. >> >> cheers, >> Michael >> >> >>> -----Original Message----- >>> From: mge...@li... >>> [mailto:mge...@li...] On Behalf >>> Of Helen Parkinson >>> Sent: Monday, July 24, 2006 12:59 AM >>> To: Ugis Sarkans >>> Cc: mged-mage2 >>> Subject: Re: [Mged-mage2] Meeting Report for MAGEModelling Meeting >>> >>> >>> Hi all, >>> >>> can we use these and Michael's comments on Array etc as an agenda for >>> the next meeting - I assume this will be at the MGED Jamboree >>> in Seattle? >>> >>> cheers >>> >>> Helen >>> >>> Ugis Sarkans wrote: >>> >>>> Hi all, >>>> >>>> Following up on what I promised to do in the meeting: >>>> >>>> 1) A cleaned-up version of the model has been posted on >>>> http://www.mged.org/Workgroups/MAGE/magev2.html >>>> >>>> a) Associations from ArrayManufacture, Hybridization, >>>> >>> ImageAcquisition >>> >>>> and MeasuredDataExtraction to >>>> GenericProtocol have been added, derived from >>>> ProtocolApplication->Protocol. Data Transformation already >>>> had that, and I didn't touch HLA. >>>> >>>> b) general cleanup of diagrams in Array and Data packages - >>>> >>> again didn't >>> >>>> touch HLA. QPCR is not finished. >>>> >>>> c) Michael enquired about some unnamed assoications in the >>>> >>> Array diagram >>> >>>> - I think this is not quite finished >>>> either, especially in the light of changes to >>>> >>> DesignElements. I still >>> >>>> think that a concept of MaterialReporter would >>>> make sense, and ArrayFeatureMaterial should go. >>>> >>>> d) Some small issues I found: >>>> - ArrayImage - needs format, since it derives directly >>>> >>> from Data, >>> >>>> not ExternalData >>>> - If we want to support post-ImageAcquisition manipulations of >>>> HybridizedArray (e.g. another >>>> ImageAcquisition) like in MAGEv1, then ImageAcquisition should have >>>> outputMaterial HybridizedArray, not >>>> just outputData. >>>> >>>> 2) Mapping v1 to v2. >>>> >>>> I'm trying to describe mapping as a series of diagrams that >>>> >>> show how >>> >>>> various structures of MAGEv1 (objects+links+ >>>> attribute values) should be translated into MAGEv2 structures. 6 >>>> diagrams are in >>>> >>>> http://www.ebi.ac.uk/~ugis/MAGEmapping/ >>>> >>>> This is not finished, I haven't >>>> done any explaining text, but I hope that this way the >>>> >>> explanation might >>> >>>> be easier than when there are only bits >>>> of object models to look at. Feedback welcome on both the >>>> >>> approach and >>> >>>> details of the mapping - there are some >>>> hard bits when dealing with BioAssays. I'll not be able to >>>> >>> do anything >>> >>>> else with this now till September though. >>>> >>>> Cheers, >>>> Ugis >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> Helen Parkinson wrote: >>>> >>>> >>>> >>>>> Hi >>>>> >>>>> a draft version of the meeting report with action items >>>>> >>> and comments >>> >>>>> >>>>> >>>>> from Ugis and Andy Jones has now been posted: >>>> >>>> >>>>> www.ebi.ac.uk/~parkinso/MAGE2_modelling_Meeting_Report2_aj.doc >>>>> >>>>> MAGE2_modelling_Meeting_Report2_aj.doc >>>>> >>> <http://www.ebi.ac.uk/%7Eparkinso/MAGE2_modelling_Meeting_Repo >>> rt2_aj.doc> >>> >>>>> >>>>> Final version UML model edited by Ugis is also posted: >>>>> >>>>> www.ebi.ac.uk/~parkinso/MAGEv2_uml20_2006_07_13.zip >>>>> >>>>> MAGEv2_uml20_2006_07_13.zip >>>>> >>> <http://www.ebi.ac.uk/%7Eparkinso/MAGEv2_uml20_2006_07_13.zip> >>> >>>>> >>>>> cheers >>>>> >>>>> Helen >>>>> >>>>> >>>>> >>>>> >>>>> >>>> >>>> >>> -------------------------------------------------------------- >>> ----------- >>> >>>> Take Surveys. Earn Cash. Influence the Future of IT >>>> Join SourceForge.net's Techsay panel and you'll get the >>>> >>> chance to share your >>> >>>> opinions on IT & business topics through brief surveys -- >>>> >>> and earn cash >>> >>> http://www.techsay.com/default.php?page=join.php&p=sourceforge >>> >> &CID=DEVDEV >> >>> _______________________________________________ >>> Mged-MAGE2 mailing list >>> Mge...@li... >>> https://lists.sourceforge.net/lists/listinfo/mged-mage2 >>> >>> >> >> > > -- > Helen Parkinson, PhD > Curation Coordinator > Microarray Informatics Team, > EBI > > and > > Seconded Scientific Programme Manager > NCRI Cancer Informatics Initiative > www.cancerinformatics.org.uk > > Tel: > EBI 01223 494672 > Skype: helen.parkinson.ebi > > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share your > opinions on IT & business topics through brief surveys -- and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > Mged-MAGE2 mailing list > Mge...@li... > https://lists.sourceforge.net/lists/listinfo/mged-mage2 > |
|
From: Junmin L. <ju...@pc...> - 2006-08-02 16:06:08
|
Hi, Michael and others, I am going to take the latest mage v2 model from helen dated on 7/13/06 to modify it. As you know, there are couple validation error output from AndroMDA, I need to fix them. Also when I open up the model in MagicDraw, Besides MAGE package, there is a separate "Relations" item on the menu, it contains a dozen of associations which should belong to MAGE package under it, not directly under the root. I think their ownerships are just wrong. I will change them also. cheers, ---junmin |
Thanks for helping keep SourceForge clean.
X