From: Chris S. <sto...@pc...> - 2007-03-23 17:57:02
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Great idea. Chris On Mar 23, 2007, at 1:18 PM, Helen Parkinson wrote: > I suggest that we do some round tripping of MAGETAB. > > Don Maier wrote: >> Hi Junmin, >> >> As I mentioned, it will be great for us to have a chance to review >> your work with processing MIAME-compliant documents of various sorts. >> >> Your concern about MAGE-TAB compliance ties directly into the agenda >> item under my name: If we have one and only one parser (accepter) for >> MAGE-TAB, then every question of compliance is settled once and for >> everyone. >> >> Regards, >> Don Maier >> >> >> On Mar 23, 2007, at 9:16 AM, Junmin Liu wrote: >> >>> Hi, Don and Jamboree attendees, >>> Since last Oct., for one of the requirement of our in-house data >>> loading pipeline, we developed an extendable framework MR_Ti and a >>> set of toolkits to help loading MIAMI-compliant documents in >>> different formats into our GUS schema. Chris has suggested me to >>> present this on the Jamboree to get feedback and to see if it can be >>> useful to the communities. >>> >>> Note MAGE-Tab is part of our pipeline, we have started to generate >>> and load MAGE-Tabs to GUS, we will also like to show public the =20 >>> files >>> we have and make sure they are exchangable and compliant with >>> MAGE-Tab spec. 1.0 release. >>> >>> Thanks, >>> ---junmin >>> >>> >>> >>> On Wed, 21 Mar 2007, Don Maier wrote: >>> >>>> Hi friends, >>>> >>>> We're looking forward to seeing and meeting with you in next =20 >>>> week in >>>> sunny California. Current forecasts are for a cloudy Tuesday, but a >>>> sunny remainder of the week in the upper 60's. >>>> >>>> Here's my current list of attendees and agenda. Please let me know >>>> if you wish to contribute any more bodies or agenda items! >>>> >>>> Regards, >>>> Don Maier >>>> >>>> >>>> MAGE Jamboree: March 27 - 30 >>>> Stanford University: Clark Center, Rm. 362 >>>> >>>> Attendees: >>>> >>>> 1) Cathy Ball (SMD) >>>> 2) Cate Beauheim (Stanford) >>>> 3) Alvis Brazma (EBI) >>>> 4) Steve Chervitz (Affymetrix) >>>> 5) Junmin Liu (U. Penn) >>>> 6) Don Maier (SMD) >>>> 7) Tim Rayner (EBI) >>>> 8) Ugis Sarkans (EBI) >>>> 9) Paul Spellman (Lawrence Berkeley National Laboratory) >>>> 10) Joe White (Dana-Farber/Harvard Cancer Center) >>>> >>>> >>>> Agenda: >>>> >>>> 1) Tim =96 Final version of MAGE-TAB >>>> >>>> 2) Alvis/Ugis =96 MAGE-TAB object model: >>>> >>>> a) Possible move to FUGE-TAB >>>> >>>> b) Discussion of basic concepts (no formal proposal yet). >>>> >>>> 3) Don =96 The =93one-parser=94 requirement and how to satisfy it = for >>>> MAGE-TAB: >>>> >>>> a) There is thought to be a strong requirement to have exactly one >>>> MAGE-TAB parser in one body of code in one language that can be =20 >>>> used >>>> from either a Java or a Perl programming environment. Satisfying >>>> this requirement would ensure that MAGE-TAB never destroys =20 >>>> itself on >>>> the shoals of disagreeing acceptors. >>>> >>>> b) Proposal for how to satisfy this requirement. >>> --------------------------------------------------------------------=20= >>> ----- >>> Take Surveys. Earn Cash. Influence the Future of IT >>> Join SourceForge.net's Techsay panel and you'll get the chance to >>> share your >>> opinions on IT & business topics through brief surveys-and earn cash >>> http://www.techsay.com/default.php?=20 >>> page=3Djoin.php&p=3Dsourceforge&CID=3DDEVDEV__________________________= ____=20 >>> _________________ >>> <http://www.techsay.com/default.php?=20 >>> page=3Djoin.php&p=3Dsourceforge&CID=3DDEVDEV__________________________= ____=20 >>> _________________> >>> Mged-mage mailing list >>> Mge...@li... <mailto:Mged-=20 >>> ma...@li...> >>> https://lists.sourceforge.net/lists/listinfo/mged-mage >> >> Don Maier >> Sr. Software Designer/Research >> Dept. of Biochemistry >> Stanford University School of Medicine >> >> >> ---------------------------------------------------------------------=20= >> --- >> >> ---------------------------------------------------------------------=20= >> ---- >> Take Surveys. Earn Cash. Influence the Future of IT >> Join SourceForge.net's Techsay panel and you'll get the chance to =20 >> share your >> opinions on IT & business topics through brief surveys-and earn cash >> http://www.techsay.com/default.php?=20 >> page=3Djoin.php&p=3Dsourceforge&CID=3DDEVDEV >> ---------------------------------------------------------------------=20= >> --- >> >> _______________________________________________ >> Mged-mage mailing list >> Mge...@li... >> https://lists.sourceforge.net/lists/listinfo/mged-mage >> > > --=20 > Helen Parkinson, PhD > Curation Coordinator > Microarray Informatics Team, > EBI > > EBI 01223 494672 > Skype: helen.parkinson.ebi > > > ----------------------------------------------------------------------=20= > --- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to =20 > share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php?=20 > page=3Djoin.php&p=3Dsourceforge&CID=3DDEVDEV > _______________________________________________ > Mged-mage mailing list > Mge...@li... > https://lists.sourceforge.net/lists/listinfo/mged-mage |