From: Helen P. <par...@eb...> - 2007-03-23 17:18:30
|
I suggest that we do some round tripping of MAGETAB. Don Maier wrote: > Hi Junmin, > > As I mentioned, it will be great for us to have a chance to review > your work with processing MIAME-compliant documents of various sorts. > > Your concern about MAGE-TAB compliance ties directly into the agenda > item under my name: If we have one and only one parser (accepter) for > MAGE-TAB, then every question of compliance is settled once and for > everyone. > > Regards, > Don Maier > > > On Mar 23, 2007, at 9:16 AM, Junmin Liu wrote: > >> Hi, Don and Jamboree attendees, >> Since last Oct., for one of the requirement of our in-house data >> loading pipeline, we developed an extendable framework MR_Ti and a >> set of toolkits to help loading MIAMI-compliant documents in >> different formats into our GUS schema. Chris has suggested me to >> present this on the Jamboree to get feedback and to see if it can be >> useful to the communities. >> >> Note MAGE-Tab is part of our pipeline, we have started to generate >> and load MAGE-Tabs to GUS, we will also like to show public the files >> we have and make sure they are exchangable and compliant with >> MAGE-Tab spec. 1.0 release. >> >> Thanks, >> ---junmin >> >> >> >> On Wed, 21 Mar 2007, Don Maier wrote: >> >>> Hi friends, >>> >>> We're looking forward to seeing and meeting with you in next week in >>> sunny California. Current forecasts are for a cloudy Tuesday, but a >>> sunny remainder of the week in the upper 60's. >>> >>> Here's my current list of attendees and agenda. Please let me know >>> if you wish to contribute any more bodies or agenda items! >>> >>> Regards, >>> Don Maier >>> >>> >>> MAGE Jamboree: March 27 - 30 >>> Stanford University: Clark Center, Rm. 362 >>> >>> Attendees: >>> >>> 1) Cathy Ball (SMD) >>> 2) Cate Beauheim (Stanford) >>> 3) Alvis Brazma (EBI) >>> 4) Steve Chervitz (Affymetrix) >>> 5) Junmin Liu (U. Penn) >>> 6) Don Maier (SMD) >>> 7) Tim Rayner (EBI) >>> 8) Ugis Sarkans (EBI) >>> 9) Paul Spellman (Lawrence Berkeley National Laboratory) >>> 10) Joe White (Dana-Farber/Harvard Cancer Center) >>> >>> >>> Agenda: >>> >>> 1) Tim – Final version of MAGE-TAB >>> >>> 2) Alvis/Ugis – MAGE-TAB object model: >>> >>> a) Possible move to FUGE-TAB >>> >>> b) Discussion of basic concepts (no formal proposal yet). >>> >>> 3) Don – The “one-parser” requirement and how to satisfy it for >>> MAGE-TAB: >>> >>> a) There is thought to be a strong requirement to have exactly one >>> MAGE-TAB parser in one body of code in one language that can be used >>> from either a Java or a Perl programming environment. Satisfying >>> this requirement would ensure that MAGE-TAB never destroys itself on >>> the shoals of disagreeing acceptors. >>> >>> b) Proposal for how to satisfy this requirement. >> ------------------------------------------------------------------------- >> Take Surveys. Earn Cash. Influence the Future of IT >> Join SourceForge.net's Techsay panel and you'll get the chance to >> share your >> opinions on IT & business topics through brief surveys-and earn cash >> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV_______________________________________________ >> <http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV_______________________________________________> >> Mged-mage mailing list >> Mge...@li... <mailto:Mge...@li...> >> https://lists.sourceforge.net/lists/listinfo/mged-mage > > Don Maier > Sr. Software Designer/Research > Dept. of Biochemistry > Stanford University School of Medicine > > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > ------------------------------------------------------------------------ > > _______________________________________________ > Mged-mage mailing list > Mge...@li... > https://lists.sourceforge.net/lists/listinfo/mged-mage > -- Helen Parkinson, PhD Curation Coordinator Microarray Informatics Team, EBI EBI 01223 494672 Skype: helen.parkinson.ebi |