From: Don M. <dM...@ge...> - 2007-03-23 17:05:12
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Hi Junmin, As I mentioned, it will be great for us to have a chance to review =20 your work with processing MIAME-compliant documents of various sorts. Your concern about MAGE-TAB compliance ties directly into the agenda =20 item under my name: If we have one and only one parser (accepter) =20 for MAGE-TAB, then every question of compliance is settled once and =20 for everyone. Regards, Don Maier On Mar 23, 2007, at 9:16 AM, Junmin Liu wrote: > Hi, Don and Jamboree attendees, > Since last Oct., for one of the requirement of our in-house data =20 > loading pipeline, we developed an extendable framework MR_Ti and a =20 > set of toolkits to help loading MIAMI-compliant documents in =20 > different formats into our GUS schema. Chris has suggested me to =20 > present this on the Jamboree to get feedback and to see if it can =20 > be useful to the communities. > > Note MAGE-Tab is part of our pipeline, we have started to generate =20 > and load MAGE-Tabs to GUS, we will also like to show public the =20 > files we have and make sure they are exchangable and compliant with =20= > MAGE-Tab spec. 1.0 release. > > Thanks, > ---junmin > > > > On Wed, 21 Mar 2007, Don Maier wrote: > >> Hi friends, >> >> We're looking forward to seeing and meeting with you in next week =20 >> in sunny California. Current forecasts are for a cloudy Tuesday, =20= >> but a sunny remainder of the week in the upper 60's. >> >> Here's my current list of attendees and agenda. Please let me =20 >> know if you wish to contribute any more bodies or agenda items! >> >> Regards, >> Don Maier >> >> >> MAGE Jamboree: March 27 - 30 >> Stanford University: Clark Center, Rm. 362 >> >> Attendees: >> >> 1) Cathy Ball (SMD) >> 2) Cate Beauheim (Stanford) >> 3) Alvis Brazma (EBI) >> 4) Steve Chervitz (Affymetrix) >> 5) Junmin Liu (U. Penn) >> 6) Don Maier (SMD) >> 7) Tim Rayner (EBI) >> 8) Ugis Sarkans (EBI) >> 9) Paul Spellman (Lawrence Berkeley National Laboratory) >> 10) Joe White (Dana-Farber/Harvard Cancer Center) >> >> >> Agenda: >> >> 1) Tim =96 Final version of MAGE-TAB >> >> 2) Alvis/Ugis =96 MAGE-TAB object model: >> >> a) Possible move to FUGE-TAB >> >> b) Discussion of basic concepts (no formal proposal yet). >> >> 3) Don =96 The =93one-parser=94 requirement and how to satisfy it = for =20 >> MAGE-TAB: >> >> a) There is thought to be a strong requirement to have exactly =20= >> one MAGE-TAB parser in one body of code in one language that can =20 >> be used from either a Java or a Perl programming environment. =20 >> Satisfying this requirement would ensure that MAGE-TAB never =20 >> destroys itself on the shoals of disagreeing acceptors. >> >> b) Proposal for how to satisfy this requirement. > ----------------------------------------------------------------------=20= > --- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to =20 > share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php?=20 > page=3Djoin.php&p=3Dsourceforge&CID=3DDEVDEV____________________________= ____=20 > _______________ > Mged-mage mailing list > Mge...@li... > https://lists.sourceforge.net/lists/listinfo/mged-mage Don Maier Sr. Software Designer/Research Dept. of Biochemistry Stanford University School of Medicine |