From: Junmin L. <ju...@pc...> - 2007-03-23 16:17:00
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Hi, Don and Jamboree attendees, Since last Oct., for one of the requirement of our in-house data loading=20 pipeline, we developed an extendable framework MR_Ti and a set of=20 toolkits to help loading MIAMI-compliant documents in different formats=20 into our GUS schema. Chris has suggested me to present this on the=20 Jamboree to get feedback and to see if it can be useful to the=20 communities. Note MAGE-Tab is part of our pipeline, we have started to generate and=20 load MAGE-Tabs to GUS, we will also like to show public the files we=20 have and make sure they are exchangable and compliant with MAGE-Tab spec.= =20 1.0 release. Thanks, ---junmin On Wed, 21 Mar 2007, Don Maier wrote: > Hi friends, > > We're looking forward to seeing and meeting with you in next week in sunn= y=20 > California. Current forecasts are for a cloudy Tuesday, but a sunny=20 > remainder of the week in the upper 60's. > > Here's my current list of attendees and agenda. Please let me know if y= ou=20 > wish to contribute any more bodies or agenda items! > > Regards, > Don Maier > > > MAGE Jamboree: March 27 - 30 > Stanford University: Clark Center, Rm. 362 > > Attendees: > > 1) Cathy Ball (SMD) > 2) Cate Beauheim (Stanford) > 3) Alvis Brazma (EBI) > 4) Steve Chervitz (Affymetrix) > 5) Junmin Liu (U. Penn) > 6) Don Maier (SMD) > 7) Tim Rayner (EBI) > 8) Ugis Sarkans (EBI) > 9) Paul Spellman (Lawrence Berkeley National Laboratory) > 10) Joe White (Dana-Farber/Harvard Cancer Center) > > > Agenda: > > 1) Tim =96 Final version of MAGE-TAB > > 2) Alvis/Ugis =96 MAGE-TAB object model: > > a) Possible move to FUGE-TAB > > b) Discussion of basic concepts (no formal proposal yet). > > 3) Don =96 The =93one-parser=94 requirement and how to satisfy it for = MAGE-TAB: > > a) There is thought to be a strong requirement to have exactly one=20 > MAGE-TAB parser in one body of code in one language that can be used from= =20 > either a Java or a Perl programming environment. Satisfying this require= ment=20 > would ensure that MAGE-TAB never destroys itself on the shoals of disagre= eing=20 > acceptors. > > b) Proposal for how to satisfy this requirement. |