Re: [Mged-mage] Mged-mage Digest, Vol 2, Issue 2

[Helen P. <par...@eb...>]

Arto

our files reflect external submissions as well as MAGE-ML generated from 
our own toola.
Try Experiments E-SMDB- prefix from SMD, E-TIGR- prefix from TIGR, and 
E-BAIR - from an external AE installation. These are a representative set,

cheers

Helen

Arto Viitanen wrote:
> mge...@li... wrote:
>   
>> Can anyone recommend other sources of MAGE-ML data files other than 
>> ArrayExpress and the examples on the MGEDpage?  We'd like to test our 
>> MAGE loader with a wide variety of input data.
>>
>>   
>>     
> MAGE Good Practice (http://www.ebi.ac.uk/~ele/ext/submitter.html#mgp)
> has some example XML files. I guess Affymetrix has also some array designs
> in MAGE-ML format.  Tab2Mage (http://tab2mage.sourceforge.net/) also has
> some example files. They are actually in tab format, but the program 
> converts
> them to XML. Since the tab format is easier, the program might help you make
> your own XML files easier.
>
>   

-- 
Helen Parkinson, PhD
Curation Coordinator
Microarray Informatics Team, 
EBI

and

Seconded Scientific Programme Manager
NCRI Cancer Informatics Initiative
www.cancerinformatics.org.uk

Tel:
EBI 01223 494672
Skype: helen.parkinson.ebi