[Mgb-users] Re: Question about MyGenBank

[Robert C. <rw...@al...>]

On Thursday, January 8, 2004, at 10:23  AM, Feng, Yucheng wrote:
> Hi, Robert:
>  Thanks a lot. It seems to work fine now,

That's good to hear.

> except....
>
>  One little glitch still left in update. I got an error when try to 
> update:
>
> 	[yfeng:Bioinf/MyGenBank/bin] yuchengfeng% mygb_admin update
> 	update :update
> 	updating MyGenBank
>         		ftp-ing 1222
> 	Bad file descriptor at .//mygb_admin line 193.
>
> 	gunzip: stdin: unexpected end of file
>  ...
> Maybe in the subroutine ftpNCBI( ), we should exclude the files that 
> start with con_nc.

Made these changes to the admin script:

#               next unless $file =~ /(\w+)\.flat\.gz$/;
                 next unless $file =~ /(nc\w+)\.flat\.gz$/;

Tested it with:
   mygb_admin -t update

Now the script skips the con_nc files and only gets files beginning 
with nc.

Again, thanks for the feedback.  Hopefully, when I get back from PAG I 
can get all this stuff into the CVS server on SourceForge, especially 
because I created a bunch of little helper scripts to install and 
uninstall MyGenBank.  This will allow you to easily create multiple 
instances of the data directories and the database.

Regards,
- Robert