From: Braisted, J. C. <bra...@ti...> - 2006-08-29 21:01:16
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Hi Barbara, =20 MeV version 4.0 comes with a couple of Agilent data files including a = pattern file. I didn't develop this loader and I'm not very familiar with the format = but I think it's the file from=20 the scanner that describes the orientation of the slide. =20 There is a pattern file in the 'data\other_format' that you can open to = verify the nature of the required file. =20 *Others receiving this include the person who developed the Agilent = loader and may have additional information. =20 Hope this helps, =20 John Braisted =20 John Braisted The Institute for Genomic Research (TIGR) 9712 Medical Center Drive Rockville, MD 20850=20 ________________________________ From: Barbara Carter [mailto:bc...@bi...]=20 Sent: Tuesday, August 29, 2006 4:43 PM To: mev Cc: jo...@bi... Subject: "Pattern file" I have an Agilent microarray and want to run the MeV software. I can = load the text file easily enough (page 14 of the manual), but what is = the "pattern" file that I need to load? Is this the design file that I = get from Agilent that contains the probe sequences, or is it the file = from the scanner that contains the spot location (grids)?=20 *************************************************************************= ******************************** Barbara J. Carter Laboratory Scientist EcoArray, Inc. 12085 Research Drive, Room 130 Alachua, FL 32615 Phone: (386) 418-1400 Fax: (386) 462-0875 www.ecoarray.com <http://www.ecoarray.com/> = *************************************************************************= ******************************** ><((((=BA> . . . . . . . . . . . . . . ><((((=BA> . . . . . . . . . . . = . . . . . .><((((=BA>. . . This e-mail message is intended only for the personal use of the = recipient(s) named above. This message may be an attorney-client = communication and as such privileged and confidential. If you are not = an intended recipient, you may not review, copy or distribute this = message. If you have received this communication in error, please = notify us immediately by email and delete the original message.=20 |