I added a menu option to output the distance matrix from GDMs created on samples. When Jane coded this she had both halves of the symmetric matrix in a FloatMatrix. I just dump both sides of the distance matrix and include the save date the distance metric used.
I've committed the GDMExperimentViewer to SourceForge CVS.
Software Engineer II
Pathogen Functional Genomics Resource Center (PFGRC)
J. Craig Venter Institute
9704 Medical Center Drive
Rockville, MD 20850