Peter Hoyt - 2013-06-20

I've been getting the following error when starting MEV (Windows) since version 4.8:

MeV Branch: http://mev-tm4.sourceforge.net/svnroot/mev-tm4/trunk
java.util.NoSuchElementException: There are no more tokens!
at org.tigr.util.StringSplitter.nextToken(StringSplitter.java:87)
at org.tigr.microarray.mev.annotation.PublicURL.loadURLs(PublicURL.java:414)
at org.tigr.microarray.mev.TMEV.loadAnnotationsURLs(TMEV.java:265)
at org.tigr.microarray.mev.TMEV.main(TMEV.java:216)
org.tigr.microarray.mev.annotation.InvalidAnnMappingFileException
at org.tigr.microarray.mev.TMEV.loadAnnotationsURLs(TMEV.java:266)
at org.tigr.microarray.mev.TMEV.main(TMEV.java:216)

I finally realized in older batch files, the MeV Branch used to have https://

I punched that into my browser and it worked. I'm a little puzzled how to fix this.

EDIT: Now I'm more confused because changing the last line of the batch file to:
java -Djava.library.path=lib -Xss1M -Xmx768m -cp %ClassPath% org.tigr.microarray.mev.TMEV -fileUrl https://mev-tm4.svn.sourceforge.net/svnroot/mev-tm4/trunk

gave the same error:

C:\Documents and Settings\Hoyt\Desktop\Stores and Ledgers\Bioinfo\BioInfo Programs\MEV\MeV_4_8_1>TMEVtest.bat
"64 bit Win"
C:\Documents and Settings\Hoyt\Desktop\Stores and Ledgers\Bioinfo\BioInfo Programs\MEV\MeV_4_8_1
MultiExperimentViewer - version 4.8.1 - Windows XP
Java Runtime Environment version: 1.6.0_35
Java Runtime Environment vendor: Sun Microsystems Inc.
Java Virtual Machine name: Java HotSpot(TM) Client VM
Java Virtual Machine version: 20.10-b01
Java Virtual Machine vendor: Sun Microsystems Inc.
Java 3D Runtime Environment: Java 3D Core Runtime Environment
Java 3D Runtime Environment vendor: Sun Microsystems, Inc.
Java 3D Runtime Environment version:1.2.1.04
Operating System name: Windows XP
Operating System version: 5.2
Operating System architecture: x86
MeV Build: 2727
MeV Revision Date: 2011/12/15 12:26:53
MeV Branch: https://mev-tm4.svn.sourceforge.net/svnroot/mev-tm4/trunk
java.util.NoSuchElementException: There are no more tokens!
at org.tigr.util.StringSplitter.nextToken(StringSplitter.java:87)
at org.tigr.microarray.mev.annotation.PublicURL.loadURLs(PublicURL.java:414)
at org.tigr.microarray.mev.TMEV.loadAnnotationsURLs(TMEV.java:265)
at org.tigr.microarray.mev.TMEV.main(TMEV.java:216)
org.tigr.microarray.mev.annotation.InvalidAnnMappingFileException
at org.tigr.microarray.mev.TMEV.loadAnnotationsURLs(TMEV.java:266)
at org.tigr.microarray.mev.TMEV.main(TMEV.java:216)
C:\Documents and Settings\Hoyt\Desktop\Stores and Ledgers\Bioinfo\BioInfo Programs\MEV\MeV_4_8_1>

 
Last edit: Peter Hoyt 2013-06-20