Nimblegen Data

  • Mark Campbell

    Mark Campbell - 2010-08-24

    I did a quick search in the forum and MeV manual .pdf and didn't find any info on loading Nimblegen data.   Is there a way to edit my data files so that I can upload them in either Affy RMA format or anything else that works?  Possibly not.  Sorry if I've overlooked something obvious, this is my first foray into microarray analysis…



  • raktim

    raktim - 2010-08-24

    Please take a look at under the "data" folder of MeV, where we have various sample files of various formats that we support.
    We do not support Nimblegen and I am not familiar with it either. But if you can get your data in any of the formats that corresponds to a file loader you can load any data. Also if can email us an example file structure we can make a little specific suggestion.
    Also note for un-supported arrays the user has to provide annotation if its required..
    Hope it helps,


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