I am trying to run BETR and I keep generating the error "Invalid genes found", then when I tell it to remove them and rerun it says there are not enough valid genes to run the software. What makes a gene invalid?
This error message is often encountered when running datasets containing numerous NaNs. Does your data contain many missing values and relatively few replicates?
So my dataset doesn't have any missing values that is what I thought was strange there are duplicates for 5 time points for a no treated and a treated time course and each gene ID has a value for both replicates for treated and untreated.
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