Problem Running BETR

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2010-08-09
2013-05-20
  • William Gordon

    William Gordon - 2010-08-09

    Hello,

    I am trying to run BETR and I keep generating the error "Invalid genes found", then when I tell it to remove them and rerun it says there are not enough valid genes to run the software.  What makes a gene invalid?

    Thank you

     
  • Daniel Schlauch

    Daniel Schlauch - 2010-08-10

    Hello,

    This error message is often encountered when running datasets containing numerous NaNs.  Does your data contain many missing values and relatively few replicates?

     
  • William Gordon

    William Gordon - 2010-08-10

    So my dataset doesn't have any missing values that is what I thought was strange there are duplicates for 5 time points for a no treated and a treated time course and each gene ID has a value for both replicates for treated and untreated.

     

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