File	Date	Author	Commit
bin	2017-08-24	Joerg Hagmann	[e9061f] updated streamlined scripts
doc	2014-11-12	hagmann	[2542df] manual updated
misc	2014-11-10	hagmann	[e39aab] initial pipeline release
src	2017-08-24	Joerg Hagmann	[e9061f] updated streamlined scripts
LICENSE	2014-11-06	Joerg Hagmann	[c99fcb] added license
README	2014-11-25	Jonas Müller	[942860] added sources for betabin_model

Read Me

To download, type 'git clone git://git.code.sf.net/p/methpipeline/code methpipeline'
If git is not installed on your system, check out http://git-scm.com/downloads
or ask your system administrator.

For usage and further installation instructions, please refer to the manual at doc/manual.pdf


######## LICENSE ########

This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.


######## COPYRIGHT ########

Copyright statement can be found in each file. Following people contributed to this pipeline:
- dMP program (src/dMP): Jorge Kageyama, MPI Tuebingen
- betabin_model program (src/betabin_model): Jonas Mueller, MPI Tuebingen
- numstat numerical helper programs (src/numstat): Jonas Mueller, MPI Tuebingen
- hmm_mrs (src/hmm_mrs): Andrew D. Smith and Qiang Song, University of Southern California
			 modified by Joerg Hagmann, MPI Tuebingen
- DMR pipeline (perl scripts in bin/): Joerg Hagmann, MPI Tuebingen

MPI Tuebingen: Max Planck Institute for Developmental Biology, Tuebingen, Germany.