I have a rather stupid question. I cannot find the way to import the contigs and the reads. I am using the GUI latest release (in an OS X 10.10.5) and all the dependencies, besides Usearch seem to ne ok.
Core dependencies
Prodigal: OK
Diamond: OK
HMMER: OK
BBMap: OK
Batik: OK
Aragorn: OK
MAFFT: OK
Fasttree: OK
USearch: Error (No gene treeing & chimera checking)
The Project tab is working (but of course I have no projects) but the Assembly and Reads tabs are not responding.
Any suggestions?
Best,
Maria
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Hi Maria,
in the latest versions you no longer import contigs and read files via
the GUI but place the files in a folder "input" as described in the
MetaWatt wiki...
Best wishes,
Marc
On 02/12/2016 04:04 PM, Maria Pachiadaki wrote:
Hello Marc,
I have a rather stupid question. I cannot find the way to import the
contigs and the reads. I am using the GUI latest release (in an OS X
10.10.5) and all the dependencies, besides Usearch seem to ne ok.
Core dependencies
Prodigal: OK
Diamond: OK
HMMER: OK
BBMap: OK
Batik: OK
Aragorn: OK
MAFFT: OK
Fasttree: OK
USearch: Error (No gene treeing & chimera checking)
The Project tab is working (but of course I have no projects) but the
Assembly and Reads tabs are not responding.
Marc Strous
CAIP Research Chair in Microbiology
Energy Bioengineering Group
Department of Geoscience
University of Calgary
www.ucalgary.ca/ebg
tel: (403) 220 6604
2500 University Drive NW
Calgary, AB, Canada T2N 1N4
Energy Environment and Experiental Learning (EEEL) Building
Room 509
Hello Marc,
I have a rather stupid question. I cannot find the way to import the contigs and the reads. I am using the GUI latest release (in an OS X 10.10.5) and all the dependencies, besides Usearch seem to ne ok.
Core dependencies
Prodigal: OK
Diamond: OK
HMMER: OK
BBMap: OK
Batik: OK
Aragorn: OK
MAFFT: OK
Fasttree: OK
USearch: Error (No gene treeing & chimera checking)
The Project tab is working (but of course I have no projects) but the Assembly and Reads tabs are not responding.
Any suggestions?
Best,
Maria
Hi Maria,
in the latest versions you no longer import contigs and read files via
the GUI but place the files in a folder "input" as described in the
MetaWatt wiki...
Best wishes,
Marc
On 02/12/2016 04:04 PM, Maria Pachiadaki wrote:
--
Marc Strous
CAIP Research Chair in Microbiology
Energy Bioengineering Group
Department of Geoscience
University of Calgary
www.ucalgary.ca/ebg
tel: (403) 220 6604
2500 University Drive NW
Calgary, AB, Canada T2N 1N4
Energy Environment and Experiental Learning (EEEL) Building
Room 509
A short update Marc.
I also tested it in an Ubuntu virtual machine and I get the same problem with the inactive buttons.
I am looking forward to hearing from you,
Maria