Six frame Pfam error

[Luca Zoccarato]

Hi,
I get an error in the execution of the Six frame Pfam and I hope you can help me.
The error is:

Metawatt [INFO|11:50:02] Translating contigs in six frames...
Metawatt [INFO|12:00:24] Profile DB "conserved-genes.hmm" has 138 profiles (total length 17744 characters).
Metawatt [INFO|12:00:24] Running HMMer search...
Metawatt [INFO|12:00:24] hmmsearch -E 1.00e-10 /home/zoccarato/Desktop/working_dir/genom_comp/2_Metawatt/databases/conserved-genes.hmm /project/ag-grossart/SOFTWARE/MetaWatt-3.5.3/tmp/all_gnm.fasta.6frame.translated.fasta
Metawatt [SEVERE|12:02:21] Module returned error:
java.lang.StringIndexOutOfBoundsException: String index out of range: 863135
at java.lang.String.substring(String.java:1963)
at org.metawatt.modules.ContigHMMProfileScan.parseResultsTranslated(ContigHMMProfileScan.java:568)
at org.metawatt.modules.ContigHMMProfileScan.run(ContigHMMProfileScan.java:131)
at org.metawatt.modules.ModuleRunner.processModule(ModuleRunner.java:177)
at org.metawatt.modules.ModuleRunner.processModuleWrapperInterceptOptimize(ModuleRunner.java:162)
at org.metawatt.modules.ModuleRunner.doInBackground(ModuleRunner.java:91)
at org.metawatt.modules.ModuleRunner.doInBackground(ModuleRunner.java:54)
at javax.swing.SwingWorker$1.call(SwingWorker.java:295)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at javax.swing.SwingWorker.run(SwingWorker.java:334)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)

I think it is somehow related to the java framework because if I just run the command "hmmsearch -E 1.00e-10 /home/zoccarato/Desktop/working_dir/genom_comp/2_Metawatt/databases/conserved-genes.hmm /project/ag-grossart/SOFTWARE/MetaWatt-3.5.3/tmp/all_gnm.fasta.6frame.translated.fasta " on the terminal is goes smoothly but then I don't know how to import the result in Metawatt.

Thanks a lot,
Luca Z