Hello,
I've taken Wences' advice to use the python wrapper to run the sample dataset instead of using the step-by-step script. I've run into the issue that Metassembler v1.5 requires python3, but the metassemble.py wrapper seems to be written using python2 syntax. I cannot load both python2 and python3 on my HPC cluster. Am I missing something? How do users reconcile this? Thank you!
Charles
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All the python scripts in the package work on python 2, the package does
not requires python3. Try using python2 and let me know if you find any
troubles.
Wences
On Wed, Jun 21, 2017 at 11:03 AM, Charles Bridges cmb12@users.sf.net
wrote:
Hello,
I've taken Wences' advice to use the python wrapper to run the sample
dataset instead of using the step-by-step script. I've run into the issue
that Metassembler v1.5 requires python3, but the metassemble.py wrapper
seems to be written using python2 syntax. I cannot load both python2 and
python3 on my HPC cluster. Am I missing something? How do users reconcile
this? Thank you!
After consultation with my HPC support staff I have gotten metassemble wrapper to run using python2. Still working out the kinks, will let you know how it goes. Thanks!
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
Hello,
I've taken Wences' advice to use the python wrapper to run the sample dataset instead of using the step-by-step script. I've run into the issue that Metassembler v1.5 requires python3, but the metassemble.py wrapper seems to be written using python2 syntax. I cannot load both python2 and python3 on my HPC cluster. Am I missing something? How do users reconcile this? Thank you!
Charles
Hi,
All the python scripts in the package work on python 2, the package does
not requires python3. Try using python2 and let me know if you find any
troubles.
Wences
On Wed, Jun 21, 2017 at 11:03 AM, Charles Bridges cmb12@users.sf.net
wrote:
After consultation with my HPC support staff I have gotten metassemble wrapper to run using python2. Still working out the kinks, will let you know how it goes. Thanks!