Sorry for bothering you. I have a question about mateAn
I'm trying to change bowtie2 to nvBowtie in Metassembler to compare each performance.
and i got errors. "Error reading SAM file". this error happen when it execute 'mateAn'.
i compare each samfile and there are no difference except for header file position.
is it related with sam file size? i found that each *.sam file size is different(nvBowtie's result is smaller than bowtie2) - some value is missing in nvBowtie.
So can't work well. is there any advice that you give me to solve this problem?
metassembler is work well when i use bowtie2.
Thanks you.
Last edit: HoYong LEE 2017-07-27
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Hi. I'm Lee.
Sorry for bothering you. I have a question about mateAn
I'm trying to change bowtie2 to nvBowtie in Metassembler to compare each performance.
and i got errors. "Error reading SAM file". this error happen when it execute 'mateAn'.
i compare each samfile and there are no difference except for header file position.
is it related with sam file size? i found that each *.sam file size is different(nvBowtie's result is smaller than bowtie2) - some value is missing in nvBowtie.
So can't work well. is there any advice that you give me to solve this problem?
metassembler is work well when i use bowtie2.
Thanks you.
Last edit: HoYong LEE 2017-07-27