Thanks for your help. I have another problems. I tried to use long read fasta with metassembler results. It works well till nucmer.
when running nucmer, error happen like
prenuc: tigrinc.cc:337: int ReadString(FILE, char&, long int&, char, int): Assertion 'Len > 0 && Line [Len - 1] == '\n'' failed. Aborted (core dumped) ERROR: prenuc returned non-zero ERROR: Could not parse delta file, MergePipeline/B.A.delta error no: 400 ERROR: Could not parse delta file, MergePipeline/B.A.1delta error no: 402
I searched and guessed.
Is it related with fasta file format? if does, how can i change file format?
my fasta file (Long lead have some info like)
1 edges=1591107,7141363,1069246 left=2162353 right=2077639 ver=1.7 style=3 ATATGTTT...... ... 3 edges=3323521 left=2162354 right=2061244 ver=1.7 style=3 ....
Thanks.
Log in to post a comment.
Thanks for your help. I have another problems.
I tried to use long read fasta with metassembler results.
It works well till nucmer.
when running nucmer, error happen like
prenuc: tigrinc.cc:337: int ReadString(FILE, char&, long int&, char, int): Assertion 'Len > 0 && Line [Len - 1] == '\n'' failed.
Aborted (core dumped)
ERROR: prenuc returned non-zero
ERROR: Could not parse delta file, MergePipeline/B.A.delta
error no: 400
ERROR: Could not parse delta file, MergePipeline/B.A.1delta
error no: 402
I searched and guessed.
Is it related with fasta file format? if does, how can i change file format?
my fasta file (Long lead have some info like)
Thanks.