The sample in v1.5 appears to limit insert lengths to [1000,3000] for bowtie but to [1300,2300] for mateAn.
Is this is mistake, or is there a reason why I should use different limits for the same sequencing run?
For example, in my data I estimate most of the inserts are in [100,1100] with a mode around 500. Is there some reason I should tighten up that interval for mateAn?
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The sample in v1.5 appears to limit insert lengths to [1000,3000] for bowtie but to [1300,2300] for mateAn.
Is this is mistake, or is there a reason why I should use different limits for the same sequencing run?
For example, in my data I estimate most of the inserts are in [100,1100] with a mode around 500. Is there some reason I should tighten up that interval for mateAn?