From Metagenomic Sample to Useful Visual

Invent novel visualization approaches to represent metagenomic data.

Brought to you by: bioday02022013, bioday09102012

Downloads: 0 This Week

Last Update: 2015-08-07

Browse Code ▾

Get an email when there's a new version of From Metagenomic Sample to Useful Visual

UPDATES/ NOTICES WILL BE POSTED TO THE DISCUSSION TAB: http://sourceforge.net/p/metagenomicvis/discussion/general/

Subgoals:
*Pick out anomalies within a given dataset.
*Generate time series representation of multiple datasets.
*Compress data efficiently to allow visualization of huge datasets.

Click on the "Files" tab for links to additional resources.

Data:

Human Metagenome:
ftp.ll.mit.edu/outgoing/BCD2/abscess.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/nicaragua.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/oral_diseased.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/oral_healthy.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/palm.tar.gz

Non-Human Metagenome:
ftp.ll.mit.edu/outgoing/environmental1.tar.gz
ftp.ll.mit.edu/outgoing/environmental2.tar.gz
ftp.ll.mit.edu/outgoing/environmental3.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/soil.tar.gz

Project Samples

From Metagenomic Sample to Useful Visual Screenshot 1

Project Activity

See All Activity >

Follow From Metagenomic Sample to Useful Visual

From Metagenomic Sample to Useful Visual Web Site

Other Useful Business Software

Gemini 3 and 200+ AI Models on One Platform Icon

Gemini 3 and 200+ AI Models on One Platform

Access Google's best plus Claude, Llama, and Gemma. Fine-tune and deploy from one console.

Build generative AI apps with Vertex AI. Switch between models without switching platforms.

Start Free

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of From Metagenomic Sample to Useful Visual!

Additional Project Details

Registered

2012-08-28

Report inappropriate content

Gemini 3 and 200+ AI Models on One Platform

Access Google's best plus Claude, Llama, and Gemma. Fine-tune and deploy from one console.

Build generative AI apps with Vertex AI. Switch between models without switching platforms.

Start Free

Recommended Projects

The Stargate Atlantis Computer Simulator
This is a Flash simulation of the Stargate Atlantis Computer systems including Dial Home Device and Outgoing Gate screen.
Torlock
Torlock is a simple Bash script to prevent outgoing packets from bypassing Tor when it's running.
SoftX Internet Logger
Save both incoming and outgoing Internet traffic (all data sent or received by browser, email client, instant messenger, media player and etc.) on the hard drive for future use.
mailspy filter for sendmail
mailspy is a C program which uses the sendmail milter interface for capturing and logging incoming and outgoing mail. The log files can be summarised into HTML reports including the subject and the names of attachments.
Attachment Reminder
Attachment Reminder is an Add-On (extension) for Mozilla Thunderbird that scans outgoing email for user-defined keywords (or just use the default list), and prompts you if it looks like you wanted to attach a file but didn't.