From Metagenomic Sample to Useful Visual

Invent novel visualization approaches to represent metagenomic data.

Brought to you by: bioday02022013, bioday09102012

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Last Update: 2015-08-07

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UPDATES/ NOTICES WILL BE POSTED TO THE DISCUSSION TAB: http://sourceforge.net/p/metagenomicvis/discussion/general/

Subgoals:
*Pick out anomalies within a given dataset.
*Generate time series representation of multiple datasets.
*Compress data efficiently to allow visualization of huge datasets.

Click on the "Files" tab for links to additional resources.

Data:

Human Metagenome:
ftp.ll.mit.edu/outgoing/BCD2/abscess.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/nicaragua.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/oral_diseased.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/oral_healthy.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/palm.tar.gz

Non-Human Metagenome:
ftp.ll.mit.edu/outgoing/environmental1.tar.gz
ftp.ll.mit.edu/outgoing/environmental2.tar.gz
ftp.ll.mit.edu/outgoing/environmental3.tar.gz
ftp.ll.mit.edu/outgoing/BCD2/soil.tar.gz

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2012-08-28

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